barSeed - Barley Seed Development Database

Probe CUST_6989_PI390587928

Source Contig U35_12506

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6989_PI390587928	Hv_44K_v2	GTACTTCCGCATTGATTTTGATTCTGGTCTATAGTGGTAATTGGCAGTTAATGACTAACT	551	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.332	4.748	1.539	0.522	0.329	0.293
Raw	111.066	160.464	43.951	25.020	3.214	3.255

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372010	1815	2e-24	1609 - 1668	100	60 / 60	plus	None
MLOC	MLOC_39145.3	1380	2e-24	1282 - 1341	100	60 / 60	plus	None
JLOC1	JLOC1_25505.2	1496	8e-25	1257 - 1316	100	60 / 60	plus
JLOC1	JLOC1_25505.1	1500	8e-25	1261 - 1320	100	60 / 60	plus
Harvest35	U35_12506	658	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_12506 658 Hv_44K_v2
CACGCGTCCGACTATCAGCCTCACTATGATTCGGTAGCAGGTGCTTGGGAGTGGGCGAGG
AAGACACTGAAGGATCATGCTGCCGACAAAAGAGAACACATTTACACGAGGGAGCAGCTT
GAGAATGCAAAAACAGCTGATCCTCTCTGGAATGCATCACAGTTGGAGATGGTCCACCAT
GGAAAAATGCATGGATTCATGCGAATGTATTGGGCCAAAAAAATTCTAGAATGGACCAGT
GGACCTGAAGAAGCACTTTCAATAGCAATATATTTGAATGACAAGTATCACATAGACGGC
AGGGACCCCAATGGCTATGTTGGTTGCATGTGGTCTATATGTGGCCTCCATGATCAGGGT
TGGAAGGAGCGTCCGGTATTTGGAAAGATACGTTACATGAATTATGCTGGTTGCAAGAGA
AAATTAGACGTTGATGCCTACATTTCTTACGTCAAAAGATTGGTTGCTCAACGCAAGAAA
AGGAAATTGGAGGAATCTCTGAATTCAGCAGCCAAGTACTCAAAGTCTGAGGACTAGTCC
AACTACTAACTGTACTTCCGCATTGATTTTGATTCTGGTCTATAGTGGTAATTGGCAGTT
AATGACTAACTTAAATATTGTAATTAATTGTTTGTTCATTTTAAAAAAAAAAAAAAAG

Homology of Contig U35_12506 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g08580.1	507	8e-111	protein\|FAD binding domain of DNA photolyase domain containing protein, expressed
Brachypodium v1_2	Bradi3g22580.1	504	3e-117
Arabidopsis v10	AT1G12370.2	496	2e-98	\| Symbols: PHR1, UVR2 \| photolyase 1 \| chr1:4206500-4208842 REVERSE LENGTH=496