barSeed - Barley Seed Development Database

Probe CUST_6985_PI390587928

Source Contig U35_12511

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6985_PI390587928	Hv_44K_v2	CGGCCAGCACCGCGGCGGTGCTGGGAGGCGTGGCGTTCCCGGCGTACAGCATGTCGAAGG	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59568.2	1245	2e-24	583 - 642	100	60 / 60	plus	ABC04526 ABC04527 ABC04529 ABC42451
MLOC	MLOC_59568.1	1631	2e-24	934 - 993	100	60 / 60	plus	ABC04526 ABC04527 ABC04529 ABC42451
JLOC1	JLOC1_38772.1	782	8e-25	175 - 234	100	60 / 60	plus
Harvest21	ABC21620	435	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_12511	435	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (435 bp)

>U35_12511 435 Hv_44K_v2
ACGGCGCCAAGTCGTCCTCGCCGACGTCCAGGACGACCTCGGCCACGCCGTCGCCTCCGA
GCTCGGCCATGATTCCGCATGCTACACGCGCTGCGACGTGACCGACGAGGCGCAGGTCGC
CGCGGCCGTCGACCTCGCCGTGGCGCGGCATGGCCGCCTCGACGTCATGTTCAACAACGC
CGGCATCAGCGGCACCCTAACGCCCGTCCCCCTCGGCTCCCTGGACCTCGCCGACTTCGA
CCGCGTCATGGCCGTCAACGCGCGGGCCGTGCTCGCCGGCGTCAAGCACGCCGCGCGCGT
CATGGTCCCCAACCGCCGTGGGAGCATCATCTGCACGGCCAGCACCGCGGCGGTGCTGGG
AGGCGTGGCGTTCCCGGCGTACAGCATGTCGAAGGCTGCGGTGGTGGGCCTCGTGCGCGC
CGTGGCCGGGGAGAT

Homology of Contig U35_12511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46840.1	303	5e-60	protein\|oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
Brachypodium v1_2	Bradi5g13840.1	311	4e-54
Arabidopsis v10	None