barSeed - Barley Seed Development Database

Probe CUST_6984_PI390587928

Source Contig U35_12512

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6984_PI390587928	Hv_44K_v2	TGGACGCGCTCACGTCCGATGTAAGCCCCAGGCTCAAGTCCAGCAAGAAATCAAAGAAGC	230	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.027	1.680	1.124	0.685	0.392	0.292
Raw	1038.586	1239.622	788.736	712.670	151.008	123.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58525.2	1443	7e-23	1095 - 1154	98	59 / 60	minus	None
MLOC	MLOC_58525.1	3831	7e-23	3483 - 3542	98	59 / 60	minus	None
JLOC1	JLOC1_38036.2	3864	4e-23	277 - 336	98	59 / 60	plus
JLOC1	JLOC1_38036.1	3852	4e-23	273 - 332	98	59 / 60	plus
Harvest35	U35_12512	819	3e-25	231 - 290	100	60 / 60	plus

Contig Sequence (819 bp)

>U35_12512 819 Hv_44K_v2
CAAATAGGAATTGCCCTGCTCAAGCACCCCTAGCCCGCTAGCCGCCGCCTCCACCTCCAG
TCCTCCTCCCACCGGCGCCACCCTCAGCCGCCGCCTCACCCTCCATATCCCACTTCGCCT
CTGACTGCATATCCCCTCGCCGCGGTATCTATCCATGACGGAGCTGAACCCTAAGCCCAA
GTCCGCAAAGAAAGCGAGGAAGCCCGCCGCCGGTGCGGAGGAGAAGAGCATGGACGCGCT
CACGTCCGATGTAAGCCCCAGGCTCAAGTCCAGCAAGAAATCAAAGAAGCCCGCCGCCGA
GGTGGTTGAAGAGAAGGGCGCGGACGCGCTCAAGTCCGACCTAAGTCCCGAACTCATGTC
CACCAAGAAGAAGAAGAAGAAGAAGAAGCCCGCCGCCGGTGGGGAGGAGGATGACATTGA
CGCGATCAAGTCCGACGTCGCCTCGTTCGCCTCATAGCTGGGACTTGTCCCCGGCGCCGG
CAACTCCTCCGGGTTCGACGACTCCGATTTCCGCAAGTCCGGCCCCATGAGCGCCCCCAA
ACCGCCCAAGCATCCCCAAACCCCAGAAGCGCCCGCAAACACCGAACCCCTCCAAAACCC
TAAACCTACCAAGAAGCCGCATCCTCTCGAGCTCCATGCCCCTCATACCGCCGCCACCAC
TAGTGCCGCCACCAATTACCCGCTGGTCAAGGCGAGTGCTCTCTCCGGGCAGTGGCACGC
TGATGCTGCTGAGCTGGAGGCCAGNGTCCTAGGCGACCGTAAGCATGCCCCACCAGCAGT
GGGGCTTCAAGAGATGCAGCGGATGGTGGAGCGGAAGCG

Homology of Contig U35_12512 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g47770.1	1012	8e-59
Arabidopsis v10	None