- Probe CUST_6983_PI390587928
- Source Contig U35_12513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6983_PI390587928 | Hv_44K_v2 | TAGGATGGATGAATAAATGGATGATGGGAGCTCTGATGGGCTTCTCCGTTGGTCAAAAAA | 253 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.066 | 0.270 | 1.176 | 1.523 | 1.148 | 1.038 |
| Raw | 1002.629 | 5906.343 | 23315.900 | 44412.767 | 12632.960 | 12232.060 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36752.2 | 2234 | 3e-22 | 2077 - 2132 | 100 | 56 / 56 | plus | ABC24673 |
| JLOC1 | JLOC1_23707.2 | 2592 | 1e-22 | 2361 - 2416 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_23707.1 | 2335 | 1e-22 | 2104 - 2159 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC24673 | 324 | 3e-25 | 254 - 313 | 100 | 60 / 60 | plus | ABC24673 |
| Harvest35 | U35_12513 | 324 | 3e-25 | 254 - 313 | 100 | 60 / 60 | plus |
Contig Sequence (324 bp)
>U35_12513 324 Hv_44K_v2 GGTACTAGGAAACAGTGGAACAGGTGGTGCTCTTGTCTTGTGTACATATTACCGGCATTC AAGCAATTGGTTGGTTGGTTCCGTGGTCTGCTGCTGCTGCTGTTTCCTGGGTTGATAGAT AGATAGGTTGAGAGTTGAAACAGTATGCTCTGCTCTGAGAGGTGAAATGGCCTCTGTTGA GGAGGGAGGAGGGGGTTGGGGGCTGTAGAGTTTTTCGACTTTTTTGTTTTGTTTTGTTTC CGGATGGTGTTAATAGGATGGATGAATAAATGGATGATGGGAGCTCTGATGGGCTTCTCC GTTGGTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_12513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |