barSeed - Barley Seed Development Database

Probe CUST_6981_PI390587928

Source Contig U35_12515

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6981_PI390587928	Hv_44K_v2	CATGCCGAATTAGAGATGGATTGTTTTGCTCATTTCAAATGTATCTTTTTTAGTGGCAAG	260	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72660.1	1531	2e-24	255 - 314	100	60 / 60	minus	ABC32428
JLOC1	JLOC1_48337.1	1275	4e-23	1 - 57	100	57 / 57	minus
Harvest35	U35_12515	398	3e-25	261 - 320	100	60 / 60	plus

Contig Sequence (398 bp)

>U35_12515 398 Hv_44K_v2
GGGCCAAAAAAAGGCCACAGGTGTTATGTTGGTCGGCGAGAAATGCTGGAGCTACCTACC
GGACGGACGCGCCTGCATACGCCGCGCAGGGCCGACGGTGACCTTTCTTCCACGACGGCG
ATGGATCTCTTCTTTGCGGCCAGCATCGATCCGACTTGGTGATTATTAACTTAAACAGCA
ACAGTATACATATATGAGAAGATGAGTAAGACAGAAGACTGGAAACAAGAACACGGCTAT
GCTCTGATGAAGATCATTCTCATGCCGAATTAGAGATGGATTGTTTTGCTCATTTCAAAT
GTATCTTTTTTAGTGGCAAGAAAAAAAAGACACTGGCTCTCCAGGTCCTTAGATAACTTA
ATACTTTGATTTTTGGTCTAGAAAAAAAAAAAACATGT

Homology of Contig U35_12515 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None