barSeed - Barley Seed Development Database

Probe CUST_6978_PI390587928

Source Contig U35_12519

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6978_PI390587928	Hv_44K_v2	TCTACGACCCGGAGAACGGCAAGACCTGCCACCAGTGTCGTCAGAAAACAACGGACTTTG	324	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376558	2166	2e-24	201 - 260	100	60 / 60	plus	ABC43012
MLOC	MLOC_4724.1	1869	2e-24	161 - 220	100	60 / 60	plus	ABC43012
MLOC	MLOC_4724.2	2301	2e-24	159 - 218	100	60 / 60	plus	ABC43012
JLOC1	JLOC1_2976.2	2146	8e-25	155 - 214	100	60 / 60	plus
JLOC1	JLOC1_2976.1	2142	8e-25	155 - 214	100	60 / 60	plus
Harvest21	ABC25919	513	3e-25	325 - 384	100	60 / 60	plus
Harvest35	U35_12519	513	3e-25	325 - 384	100	60 / 60	plus

Contig Sequence (513 bp)

>U35_12519 513 Hv_44K_v2
CACAAGCACAACACCCATCCCATCCCGCCCTCTCATCGGGGCGCGGCGGATTGAAATTTG
AGTTACCACCCCCAACCCCGCACCTTCCTCCCCTCACAGCCTCCTGAGCTTCCGCATTCC
ACTCTAGTCCCTCTTCCCCACCCATCCCCCCCGAGCGCGTCTCCATGGGGAGGAAGAAAG
GCGGCGGCGGCGGCGGCGCCGCGAAGGGCGTGGCCGTGACGGCGGAGCAGGCGCAGGCGA
AGGTGAAGGTGGAGCAGGAGGCCAAGAAAGCGGCTCCAAGGAAACGCAACCCGTGCCCCG
GAATCCGCGCCGTCGGCGGCCGGATCTACGACCCGGAGAACGGCAAGACCTGCCACCAGT
GTCGTCAGAAAACAACGGACTTTGCGGTGGCCTGCAAGAAGCCCGGGGAGAAGGGCCCCT
GTTCCACCCACTTCTGCCACACGTGCCTGCTCAACAGGTACGGCGAGAACGCGGAGGAGG
CGACCAAGCAGGCGGGCTGGACCTGCCCCAAAT

Homology of Contig U35_12519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None