barSeed - Barley Seed Development Database

Probe CUST_6976_PI390587928

Source Contig U35_12522

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6976_PI390587928	Hv_44K_v2	ATGGTGGTAGCTAATGATGTCGATGTGCAAAGATGTTACCTTCTTATTCATCAGACGAAG	137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63540.3	4481	7e-23	2202 - 2261	98	59 / 60	plus	ABC18411 ABC40085
MLOC	MLOC_63540.2	3191	7e-23	2301 - 2360	98	59 / 60	minus	ABC18411 ABC40085
MLOC	MLOC_63540.1	3169	7e-23	2264 - 2323	98	59 / 60	minus	ABC18411 ABC40085
JLOC1	JLOC1_41629.1	3141	4e-23	841 - 900	98	59 / 60	plus
Harvest21	ABC22811	196	1e-24	138 - 196	100	59 / 59	plus
Harvest35	U35_12522	197	3e-25	138 - 197	100	60 / 60	plus

Contig Sequence (197 bp)

>U35_12522 197 Hv_44K_v2
GAGAGAGCCCACCTTTGTTTCTGAACGTGCAACCTGACCATCATATTCTTGACATGTGTG
CCGCTCCAGGGTCTAAAACTTTCCAGTTACTTGAGATGATCCACCATGCAACAGAGCCTG
GAGTGCTTCCAACTGCCATGGTGGTAGCTAATGATGTCGATGTGCAAAGATGTTACCTTC
TTATTCATCAGACGAAG

Homology of Contig U35_12522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None