barSeed - Barley Seed Development Database

Probe CUST_6971_PI390587928

Source Contig U35_12527

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6971_PI390587928	Hv_44K_v2	TTCATGAATGCCGAAGCTATAGCGGCCCTCCCTCGTCGCTCTTCCCAGGGATGCCACGGT	96	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71615.5	1324	2e-24	75 - 134	100	60 / 60	plus	None
MLOC	MLOC_71615.2	2093	2e-24	1657 - 1716	100	60 / 60	minus	None
JLOC1	JLOC1_47611.2	2325	8e-25	346 - 405	100	60 / 60	plus
JLOC1	JLOC1_47611.1	2196	8e-25	273 - 332	100	60 / 60	plus
Harvest35	U35_12527	597	3e-25	97 - 156	100	60 / 60	plus

Contig Sequence (597 bp)

>U35_12527 597 Hv_44K_v2
TCGAGCACTGTTGGCCTGGCCGTACGTGCGCTTCTTGGACTTGGTCCGGTCGGGCGGCGC
TGCTCCAGGAGCTGCTCGGCGTGCTCCGTCGCCGCATTCATGAATGCCGAAGCTATAGCG
GCCCTCCCTCGTCGCTCTTCCCAGGGATGCCACGGTCGCCCGGGTCATGGCATTGCCAAC
CGCGGTCGTAGCCGGCGTTGCCGCGTCCGTCGCCGCGCTGGTGCTGCTGGCGGTCGCCGC
CGCGCTCTGCTGGTGGCGGCTCGGGGCGCGCCGTAGCCGGACCTCAGACACCGCCTCCGA
CGAAACTCCCCCCACGCTAGCCGAGTGGGGCAGGTGCGGCCGCACGTCGTCGGCGCCGGA
CTACCAGGGCGCCAGGCGGTTCACGCTGGAGGAGATGTCGCACGCCACCAAGAACTTCAG
CGACGCCAACCTCGTCGGCGCCGGCACCTTCGGCAAGGTCTACATGGGCCTCCTGCTCGA
CGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCCCGCCGCGCCAGGACTTCGTCGACGA
GGTGAGGAGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTG

Homology of Contig U35_12527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70970.1	385	4e-61	protein\|protein kinase, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None