barSeed - Barley Seed Development Database

Probe CUST_6959_PI390587928

Source Contig U35_24509

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6959_PI390587928	Hv_44K_v2	ACGCCTGATTTCCTATGGGATGATAAGGTACATGGATATGTCGAGCCCTTTTGGGTTATA	1114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_46083.2	6420	7e-23	3123 - 3182	98	59 / 60	minus	ABC08091
MLOC	MLOC_46083.1	6955	7e-23	3136 - 3195	98	59 / 60	minus	ABC08091
JLOC1	JLOC1_29867.3	6829	4e-23	3762 - 3821	98	59 / 60	plus
JLOC1	JLOC1_29867.1	6400	4e-23	3192 - 3251	98	59 / 60	plus
Harvest21	ABC19042	1174	3e-25	1115 - 1174	100	60 / 60	plus
Harvest35	U35_24509	1174	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_24509 1174 Hv_44K_v2
TTATAATCCGGAAAAAGGTGCTTGGACAGAATTAAGTCCTCTGGATGTCATGCAGATGCT
TGGTCGTGCAGGTAGGCCTCAGTATGACACACACGGAGAGGGAATAATCTTAACTGGCCA
CAGTGAATTGCAATACTACCTCTCCCTTATGAATCAACAGCTGCCTATTGAGAGTCAGTT
CATATCCAAGTTGGCAGATCAGTTAAATGCAGAGATTGTTCTGGGTACTATTCAGAATGC
TCGGGAAGCATGCTCTTGGCTTGGCTACACTTATCTCTACATCCGGATGCTCCGGAATCC
AACACTGTATGGCTTACCAGCAGATATCATGGAGACGGACAAAACGCTAGATGAGAGGCG
AGCTGACTTGGTGCACTCCGCTGCAAATTTGCTGGATAGGAATAATTTGATAAAGTACGA
CAGGAAAACAGGATACTTTCAGGTTACTGATCTTGGAAGGATTGCCAGTTATTACTATAT
TAGTCATGGGACTATATCGACGTACAATGAGTATCTGAAGCCCACGATGGGTGATATTGA
GCTGTGTCGATTGTTCTCTTTGAGTGAAGAGTTTAAGTATGTTAGTGTCAGACAAGATGA
GAAGATGGAGCTGGCAAAGCTTTTGGATCGTGTGCCAATTCCTATAAAAGAGAGTTTAGA
TGAGCCCAGTGCAAAGATCAATGTGCTGTTGCAAGCATATATATCTAGGTTGAAACTGGA
GGGCCTCTCCCTTGGTTCTGATATGGTCTACATCAGACAGAGTGCTGGCCGACTTCTACG
AGCACTTTTTGAGATAGTTCTGAAGAGGGGATGGGCTCAGTTAGCAGAGAAGGCTCTGAA
TCTTTGCAAGATGATTGATAAGCAGATGTGGAGTGTCCAAACACCCTTGCGCCAGTTTCC
TGGTATTCCAAAGGAAATTTTGATGAAACTGGAGAAGAAAGAATTGGCCTGGGAGAGGTA
CTATGACCTGTCATCGCAGGAAATCGGTGAACTAATCCGGTTTCAAAAGATGGGGAAGCA
GCTGCACAGGTGCATCCACCAGTTGCCGAAGTTGAACCTTTCTGCCCATGTTCAACCTAT
TACTCGCACAGTTTTGGGTTTCGAACTGACTATAACGCCTGATTTCCTATGGGATGATAA
GGTACATGGATATGTCGAGCCCTTTTGGGTTATA

Homology of Contig U35_24509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g01740.1	2178	protein\|U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
Brachypodium v1_2	Bradi3g00980.1	2180
Arabidopsis v10	AT1G20960.1	2171	\| Symbols: emb1507 \| U5 small nuclear ribonucleoprotein helicase, putative \| chr1:7302591-7309914 REVERSE LENGTH=2171