barSeed - Barley Seed Development Database

Probe CUST_6958_PI390587928

Source Contig U35_12530

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6958_PI390587928	Hv_44K_v2	AGGAAGGAAGCGGCTGCAATTCCACAAAGCTGCGGGGAGGATGCCGATAGAGATGCCGCG	1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6972.2	4933	2e-24	4858 - 4917	100	60 / 60	minus	ABC09447 ABC45584
MLOC	MLOC_6972.1	5328	2e-24	5228 - 5287	100	60 / 60	minus	ABC09447 ABC45584
MLOC	MLOC_6972.3	3735	2e-24	3653 - 3712	100	60 / 60	minus	ABC09447 ABC45584
JLOC1	JLOC1_4590.3	6064	8e-25	18 - 77	100	60 / 60	plus
JLOC1	JLOC1_4590.2	5710	8e-25	18 - 77	100	60 / 60	plus
JLOC1	JLOC1_4590.1	5719	8e-25	18 - 77	100	60 / 60	plus
Harvest21	ABC22965	184	3e-25	2 - 61	100	60 / 60	plus
Harvest35	U35_12530	185	3e-25	2 - 61	100	60 / 60	plus

Contig Sequence (185 bp)

>U35_12530 185 Hv_44K_v2
AAGGAAGGAAGCGGCTGCAATTCCACAAAGCTGCGGGGAGGATGCCGATAGAGATGCCGC
GGGGGCTCCCCTTCGCCGTGGACACGTGGGGCCCCTCCTCCCGCCCCCGGCGCCACCGCT
TCCTCACCCACGCGCACCGGGACCACCTCGTCGGCGCCGCCGGGGCCGGCCCCGGAGGAG
GGGGC

Homology of Contig U35_12530 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None