- Probe CUST_6954_PI390587928
- Source Contig U35_12534
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6954_PI390587928 | Hv_44K_v2 | AGACCTTTGTAGACTTCCACGACTTCCTCCTCGGAGCCTACAAGGACGACAACAGCACGC | 260 | GeneList: darkgrey MasterList: Transferase_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.217 | 0.321 | 1.066 | 1.403 | 1.184 | 1.053 |
| Raw | 5.951 | 12.239 | 44.379 | 83.827 | 27.462 | 27.313 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_78346.14 | 3853 | 2e-24 | 1750 - 1809 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_78346.5 | 5751 | 2e-24 | 3499 - 3558 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_78346.8 | 4548 | 2e-24 | 3498 - 3557 | 100 | 60 / 60 | plus | ABC22613 |
| MLOC | MLOC_78346.16 | 4541 | 2e-24 | 1747 - 1806 | 100 | 60 / 60 | plus | ABC22613 |
| MLOC | MLOC_78346.15 | 3165 | 2e-24 | 1634 - 1693 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_78346.3 | 5316 | 2e-24 | 2978 - 3037 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_78346.1 | 3871 | 2e-24 | 1876 - 1935 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_52214.13 | 4899 | 8e-25 | 2250 - 2309 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52214.12 | 4379 | 8e-25 | 1730 - 1789 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52214.7 | 6140 | 8e-25 | 3491 - 3550 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52214.6 | 5615 | 8e-25 | 2966 - 3025 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52214.2 | 2831 | 8e-25 | 1655 - 1714 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24003 | 590 | 3e-25 | 261 - 320 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12534 | 592 | 3e-25 | 261 - 320 | 100 | 60 / 60 | plus |
Contig Sequence (592 bp)
>U35_12534 592 Hv_44K_v2 GGAACCCGTTCCACGCGTTCAATGATGGATTCCTACCGGCGTGGCTCACGGTGTAGCACC TCCGATGCCGTGTGGTCCTCGCCGTTCTCGCGTACAAACCATGGTGGGTCGACACGTTCG GGGAGCTCGTGTCGGGCTCTCGGACCACCACGTGATCGACCTCCTACACGACAAGCGCAC GCACTACTTCTCGGGCGTCATCGTTGGGACGCGCTTCCACGACATCCTCGCCGTCGAGAC GGCTCGGACACGAGACAACCAGACCTTTGTAGACTTCCACGACTTCCTCCTCGGAGCCTA CAAGGACGACAACAGCACGCCGGAGCCCCAGCAGCCGCCGCCGCAGCAGCCATGCCGACT AAGGCTGGGGCTGATCGCGCAAGGGGAACCAGGTGATCAAGAATGAGGCGGCGGTGACGC GTTTGGCAGAGTCGATGGGGTTCGACGTGTCCGTCCTCGAGACGGCGAACGAGGCGCTGC ATGCTGGCGTCGGAGTGTGCGGCGGTGAACGTGTGCGACGTGCTGGCGGGCATGGACGGT GCTTTCCTAACCAAGCTCCTCTTTCTCCAGCCGGGCCGCACCGCGGTGCATC
Homology of Contig U35_12534 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |