barSeed - Barley Seed Development Database

Probe CUST_6951_PI390587928

Source Contig U35_12537

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6951_PI390587928	Hv_44K_v2	ATTTCTATTTCTCGTTATCGTGGAATTCGTCATCAAGATGGATCGCCCTTACGCGGTCAA	591	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.373	1.542	1.162	0.781	0.699	0.501
Raw	4390.140	3592.957	2979.527	2756.447	986.648	767.303

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26710.1	2625	2e-24	1235 - 1294	100	60 / 60	minus	None
JLOC1	JLOC1_18128.1	2270	8e-25	1238 - 1297	100	60 / 60	minus
Harvest21	ABC23904	688	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_12537	688	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_12537 688 Hv_44K_v2
CTTGATACATCCATGTCTAGCTCATGTCGATCTTCGTGTCATTTTTCTTTCATTAGCTCA
GTAGGATAGTCCACGTTGCTAGGATGTGTGGGTCTAGTCAGGTCGTGACCCTCGATCAAA
CCATCCTAGCAATGCCCTCTTCTCAAAACAGGCGTTCGATGTACGGATCATCGCCGCTTG
TCTTTGGGGGTGGGATTTTGGAATTGGAAATTGGAATTGGAAGGTTTGACAGCGCGGCAA
ATAAGTAAATCTCTTCGACATAGCTGAAGAGAAATCGAGATTGTGTGTTTGGAGAGGTGT
AGATTGTAGATTCCAGCCGAGAAGACCAGGAAAAGATAAGGATAAAGAATGTCATATATC
TCAGGAGCTAGATCACTTCCCGATGAACAAGTCAGAATTGCCTCAACAAAAATGGATGGA
ATTGGACCGAAAAAAGCCATTCAGCTTCGTTATCGATTAGGTATCAGTGGGAACATCAAG
ATGAATGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATAGCTCAAGATCAT
GTTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTAATTTCTATT
TCTCGTTATCGTGGAATTCGTCATCAAGATGGATCGCCCTTACGCGGTCAACGAACTCAT
ACTAATGCAAGGACTGCTCGCAAGCAAA

Homology of Contig U35_12537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None