- Probe CUST_6950_PI390587928
- Source Contig U35_12538
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6950_PI390587928 | Hv_44K_v2 | CCTTTTGTTATGCTGTTGGAGAGCTGTGGTGTATCACACTGTTATTATTAACATGGGACA | 579 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.293 | 1.227 | 1.080 | 0.897 | 0.351 | 0.312 |
| Raw | 4032.203 | 5711.893 | 4596.053 | 5726.363 | 830.527 | 804.766 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36811.1 | 1508 | 7e-23 | 1402 - 1461 | 98 | 59 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.2 | 1511 | 7e-23 | 1405 - 1464 | 98 | 59 / 60 | plus | ABC22788 |
| MLOC | MLOC_36811.7 | 1449 | 9e-22 | 1392 - 1449 | 98 | 57 / 58 | plus | ABC22788 |
| MLOC | MLOC_36811.8 | 1450 | 9e-22 | 1393 - 1450 | 98 | 57 / 58 | plus | ABC22788 |
| JLOC1 | JLOC1_23752.9 | 1501 | 4e-23 | 1320 - 1379 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.8 | 1559 | 4e-23 | 1378 - 1437 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.7 | 1549 | 4e-23 | 1368 - 1427 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.6 | 1576 | 4e-23 | 1395 - 1454 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.5 | 1596 | 4e-23 | 1415 - 1474 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.4 | 1593 | 4e-23 | 1412 - 1471 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.3 | 1579 | 4e-23 | 1398 - 1457 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.2 | 1570 | 4e-23 | 1389 - 1448 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_23752.1 | 1582 | 4e-23 | 1401 - 1460 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC22788 | 664 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus | ABC22788 |
| Harvest35 | U35_12538 | 664 | 3e-25 | 580 - 639 | 100 | 60 / 60 | plus |
Contig Sequence (664 bp)
>U35_12538 664 Hv_44K_v2 CATGTACGATGTGTGGCAATGTAAACTGGGCCAAGCGGACCAAATGTAATGTCTGTAACA CCTCTAGGCCAGGTCACAATGAAGGTGGTGTGAGAGGTGGCCGGGGTGGCGGCTTTAAAG AACTTGATGAAGAAGAACTAGAAGAAGTACGGAGGCGCCGGAAAGAAGCTGAGGAGGATG ATGGAGAAATGTATGATGAATTTGGTAACCTGAAAAAGAAGTTCCGTGCTAAGTCACATC AAACTGAGAGTACACCAACACTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCACC GTTCCACTGAGAGAGAAGGCCGAGAGAGGAGCAGAGATCGGGGCAGGGACGACTACGATG AAAGGGAAAGCAAGAACAGAGACAGAGGTTCTCATGGAAGAGAGCGGCGCCGTAGCCGAA GCAGGAGCAGAGACCGCGAGAAGGAGAGGGGGAGGGACAGGGGCAGAGATCGTGGCAACG AGAGAAGCTGGGAGCGCGGCACTGATCGTGAACGTGATCGCTACAGATGATATGTCAGGA GTTTTGTCATGTTTGCTTGCCACTTTTCGGTTTTCTGAACCTTTTGTTATGCTGTTGGAG AGCTGTGGTGTATCACACTGTTATTATTAACATGGGACAAGCTTATTAAAAAAAAAAAAA AAAA
Homology of Contig U35_12538 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |