barSeed - Barley Seed Development Database

Probe CUST_694_PI390587928

Source Contig U35_21780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_694_PI390587928	Hv_44K_v2	AGAAAACTCTGTATTTCGTGGTTCTCCAATCAGCACAATAGCCAGAGCTATACCATATCA	1219	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.049	0.082	0.507	2.119	1.780	2.617
Raw	88.493	236.865	1290.843	8379.730	2426.173	3877.480

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48873.1	771	9e-22	283 - 344	97	60 / 62	plus	ABC14348 ABC15661
JLOC1	JLOC1_31336.1	781	5e-22	282 - 343	97	60 / 62	plus
Harvest21	ABC15661	1283	3e-25	1220 - 1279	100	60 / 60	plus	ABC15661
Harvest35	U35_21780	1283	3e-25	1220 - 1279	100	60 / 60	plus

Contig Sequence (1283 bp)

>U35_21780 1283 Hv_44K_v2
TTGGGGAAAAGCGTACTACTACAGGTCTGAGCAGCAACAAAGGCACGCGACGCGCCCGTG
ATGGATGCTTTTGTCATGAATGGATCCATCGTAAAGAAAGGGGGAGTCAACTGAATCAGG
GTCATGTGCAGTGAGGGGAGGGGAGGGAGCAGTTCCACGTCATGATCCTGCCTGCCTGCC
TGCGTGGGGATCGATGATGCAAAAAACAAAAAACAAGTTCACCGGGAGGTCAGTCTGCCT
GCACTAGTGAGTTATAACCTTTTTCTACCCTCGAGAAGCCTCTGTCTTCTCCACCGCTAG
GCGCTAGCCCACAGGCCGAATCTCTCCGCCTCCGTTCTTGGTCTTCTTCCTTTGGGGAGG
AGGAGGAGGGGGAAGCATGGGCAACGAGTTCGACTACCTGTTCAAGCTCCTCCTGATCGG
CGACTCCTCCGTCGGCAAGTCCTGCTTCCTCCTCCGTTTCGCCGACGACTCGTATGTGGA
CAGCTACATTAGCACCATCGGCGTTGACTTTAAAATCCGCACTCTCGACATGGATGGGAA
GACCATCAAATTGCAGATTTGGGACACAGCAGGACAGGAGCGGTTCAGAACCATCACAAG
CAGCTACTACCGAGGAGCTCACGGGATCATCATTGTCTATGACATCACGGACATGGAGAG
CTTCAACAATGTCAAGCAATGGCTGAGCGAGATCAACAAGTACGCCAACGACAGTGTTCG
CAAGCTACTTGTCGGTAACAAGTGTGATCTGGCTGAGAGCAGGGTCGTCGATACTGCCGT
AGCACAGGCCTATGCTGATGAGATAGGTATTCCTTTCCTAGAAACAAGTGCTAAAGAGTC
CATCAATGTCGAAGAGGCTTTTTTGGCAATGTCTGCAGCAATCAAGAAGAGCAAAGCTGG
CAGCCAAGGAGTCCTGGAGAGGAAGCCATCCAATCTGGTCCAGATGAGAGGCCAGCCAAT
TCAGCAGCAGCAGGAGAAGCAGAAGAGCAGCTGCTGTTCAACATGACCCGAGCTCGGACT
CGAGGGAGGGTAAGACATCCCGCCAAGATGCCCTGGCGCAGCTACCTTCCAGGAATCAGG
ATGAACATGGCATGTGCCAAATGTGGACCTCTTACTTCCTTGTCTTTTGAAACACTTTGG
TAGCTAGCTGCAAACTGTATCAGTAAGCAAGTTTGCGTGTTCGATCTTTCGGTGGAGCAA
AATCTGTCAAAATTGTGTCAGAAAACTCTGTATTTCGTGGTTCTCCAATCAGCACAATAG
CCAGAGCTATACCATATCAACCA

Homology of Contig U35_21780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01490.1	207	4e-103	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi5g11280.1	213	6e-122
Arabidopsis v10	AT3G11730.1	205	5e-98	\| Symbols: ATFP8, ATRABD1, RABD1 \| Ras-related small GTP-binding family protein \| chr3:3709490-3711397 REVERSE LENGTH=205