barSeed - Barley Seed Development Database

Probe CUST_6947_PI390587928

Source Contig U35_24511

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6947_PI390587928	Hv_44K_v2	GTGCTGAATGATCATGGTGTTTTCTTCTTTCTCTAGTTGTGTTCATTGTGCCGGAAAAAA	899	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.591	2.272	1.213	0.651	0.244	0.218
Raw	102.489	103.264	49.963	45.728	4.007	4.091

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC29895	219	3e-25	149 - 208	100	60 / 60	plus	ABC29895
Harvest35	U35_24511	970	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (970 bp)

>U35_24511 970 Hv_44K_v2
GCACTGATCTCATTCAGCAGTACCTGGACGAGAACAAGCAGCTGATCCTGGCCATCCTCG
ACAACCAGAACAACGGCAAGGTGGAGGAGTGTGCACGGAACCAAGCTAAGCTCCAGCAGA
ACCTCATGTACCTCGCCGCCATCGCCGACAGCCAGCCTCCGCAGACGGCGTCGCTGTCTC
AGTACCCGTCGAACCTGATGATGCAGTCCGGGCCGCGGTACATGCCGCAGCAGTCGGCGC
AGATGATGTCGCCGCAGTCGGCGCAGATGATGGCGGCGCGGTCGTCGATGATGTACGCGC
AGCAGGCCATGTCGCCGCTCCAGCAGCAGCAGCAGCAGCAGCAGCACCAGGCGGCGGCGC
ACGGCCAGCTGGGGATGTCCTCCGGCGCGACCACCGGGTTCAACCTCCTCCACGGCGAGG
CCAGCATGGGCGGCGGCGGCACCGGCAACAGCATGATGAACCCCAGCGTCTTCTCGGACT
ACGGCCGCGGCGGCGCCAAGGAGGGGTCGACCTCGCTGTCTGCCGACGCGCGCGGCGCCA
ACTCCGGCGCGCACAGCGGCGACGGGGAGTACCTCAAGGGCACCGACGAGGAAGGAAGCT
AGGCCGTCGTCGCTAAGCACCGGCATAGCAGCAGCAGCAGCAGGAAGAAGAGGAGTAGCA
GGTAGCGTTCGAGGACGGTAGTGGCATGGTAGTAGCGGAGTAGTAGCAGGTAGCTAAGGT
TGTTGCGTTGGCCAAGGTTTTAGGTGAGTGAGTTCCATGGAACCTGGAGGTGGTAGTGGC
GTCTGCATGCAGGCTCGCTTGTTTTGGATGTGCATGGCAGGTTCTCGATCCAATCCTAAT
TAAGATGTAGCGTCGGATGTCGCGGGTGGTGGCGATGGTTTGTGAACACTCCCTATGTAG
TGCTGAATGATCATGGTGTTTTCTTCTTTCTCTAGTTGTGTTCATTGTGCCGGAAAAAAA
AAAAAAAAAA

Homology of Contig U35_24511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None