- Probe CUST_6945_PI390587928
- Source Contig U35_24513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6945_PI390587928 | Hv_44K_v2 | TCGGGAGGAAGATGTGTTCACTTCCGTTTATTTGTGAACGTAATCATGTTCGGGAGGAAA | 377 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.084 | 0.163 | 1.279 | 2.300 | 1.608 | 1.088 |
| Raw | 15.705 | 47.495 | 335.228 | 928.638 | 228.840 | 168.574 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_23429.1 | 904 | 3e-22 | 171 - 229 | 98 | 58 / 59 | minus | ABC19291 |
| JLOC1 | JLOC1_16187.1 | 1093 | 1e-22 | 360 - 418 | 98 | 58 / 59 | minus | |
| Harvest21 | ABC19291 | 447 | 3e-25 | 11 - 70 | 100 | 60 / 60 | minus | ABC19291 |
| Harvest35 | U35_24513 | 447 | 3e-25 | 378 - 437 | 100 | 60 / 60 | plus |
Contig Sequence (447 bp)
>U35_24513 447 Hv_44K_v2 GCACGAGGCACCGCCGCCTCCCCCACCACCGCCGGAGCCTTGTCAGTGCTCGCAGTCGCA TCAGCCCGATCACGGTGGTTGTGGCTGCGGCAAGCCGCCTAATTGCTGGCCGCCGCCCAC CTGGCCGCCGCAGCAACCCTGCTTCATGCCGCCGCCATGGTTCACGGAGGAGAACCCGTC GGACGCCTGCTCCATCATGTGATGATTGATCTTTTATTACTACTACGATGAAGACCGCAT GGAATTGCTCTCAACTGCATTGATGTGATGGTGCTACGGTATCTGCACCGGGTAAAAAGA GCTCTACCGTGTATCGAAAACCAGAATAATGCGAGCCGTCCAGTGTTACTTCTGTTTATT TGTGAATGTAATCATGTTCGGGAGGAAGATGTGTTCACTTCCGTTTATTTGTGAACGTAA TCATGTTCGGGAGGAAAAAAAAAAAAA
Homology of Contig U35_24513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |