- Probe CUST_6941_PI390587928
- Source Contig U35_24517
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_6941_PI390587928 | Hv_44K_v2 | CCGTGTGATCTGATTTGTTCATGAGGAGCGATTCTAATATACTCCATTCTTTTACAAAAA | 414 | GeneList: darkslateblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.189 | 2.948 | 1.420 | 0.878 | 0.404 | 0.442 |
Raw | 103.564 | 201.425 | 86.765 | 81.746 | 13.664 | 16.651 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_80677.1 | 349 | 7e-23 | 29 - 85 | 100 | 57 / 57 | minus | ABC35013 |
MLOC | AK369118 | 2284 | 9e-22 | 2230 - 2284 | 100 | 55 / 55 | plus | ABC35013 |
JLOC1 | JLOC1_53719.1 | 408 | 4e-23 | 90 - 146 | 100 | 57 / 57 | minus | |
Harvest21 | ABC35013 | 358 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus | ABC35013 |
Harvest35 | U35_24517 | 486 | 3e-25 | 415 - 474 | 100 | 60 / 60 | plus |
Contig Sequence (486 bp)
>U35_24517 486 Hv_44K_v2 GGCAGGAGGTCTACGTCAGGGTCGTCAACCCCGAGGACGGCGCCGACAAGACCGAGATGG CCGTCCCCCGCAACGCCCTCTTCTGCGGCCAGCTCCATAAGTACCAGAAGGAGCAGACTC CTCATCACAAGATGGCGGCGGCGGCGTCTGCGGCGGCCGTGCCGCCGTTGGCCGTGTGCA GCCAGCTTGTGGCATTGGTGATGCTCGTCGTCGGAGCCCTCGTGTTCGCGTCGTAGCGCG GCGGCATGGATCACCTTTTGTGCTGCGCCTGAGTTTTTTTTTATTCTGAGGTGACTACGT GTGTGTAGGTTAGGATCAGAGGTGTTGGTTGCGTTTGTCAAGTGTCCCACTGGACTGTTC CAATTGCCCACGCACCATGTTTTGTTTTGTTCTCGTAGCATTAGGAGGTGTGGGCCGTGT GATCTGATTTGTTCATGAGGAGCGATTCTAATATACTCCATTCTTTTACAAAAAAAAAAA AAAAGG
Homology of Contig U35_24517 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |