barSeed - Barley Seed Development Database

Probe CUST_6930_PI390587928

Source Contig U35_24521

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6930_PI390587928	Hv_44K_v2	TTGTTTTGCTTAATTTATAGAGCGGGGAATCTGATGGGTGCAAAATAACACTGTTGAAAA	580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44151.3	1644	7e-23	1520 - 1580	98	60 / 61	plus	ABC18786
MLOC	MLOC_44151.1	1649	7e-23	1526 - 1586	98	60 / 61	plus	ABC18786
MLOC	MLOC_44151.2	1524	7e-23	1402 - 1462	98	60 / 61	plus	ABC18786
JLOC1	JLOC1_28586.2	1555	4e-23	1433 - 1493	98	60 / 61	plus
JLOC1	JLOC1_28586.1	1427	4e-23	1305 - 1365	98	60 / 61	plus
Harvest21	ABC18786	646	3e-25	7 - 66	100	60 / 60	minus	ABC18786
Harvest35	U35_24521	646	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_24521 646 Hv_44K_v2
GGAAATTTTGATATGAAGGATGTTCTCCAGTCTACGTATTTCTTCAACTAGCGTGGTTGC
AGCGGGCACATTGTCCTATTTTTCGCTCAGCTGCCCAGCTGTGGCCTTGCAGAAATCTCA
AGTTCCGTGGAAGTACATGAGTGACTGACTCAGATGATGAAGCTAATTCTTTTGCTGATT
GACGTGTCAACCTGTGGACAACTTGCATGAAGATAATCCCGCAAGACTGGATTTACAGAG
GTGCACAGAAGACGCTCTTGCTTTGCTGCAGAATTTCATGGTTTCAACATCGCCAGTCAT
AAGCAAGTTGCATTACTACTGCCAAGGAGCTGGCAGTAAACAGAGCTGTCCAGGAGGAGG
TTGAAGATAGTGACATTCAAAATAAGTGGAAACCGTGACCAAGAAGCACTTGCTGTGGAG
CTTTTTCCTGAGTTTGTGATATAGTGTAGTTTTTATCTTGTGCCCGTTTTCCCCCTTTCT
CAAGGCTCACGCGTAGCACGCTCACTCACAGATCATCAGTTTCCTGTAAATGTAATTATA
TGTAATTTTTGGCCTCTTCACTAACCTATCATTTTTTTTCTTGTTTTGCTTAATTTATAG
AGCGGGGAATCTGATGGGTGCAAAATAACACTGTTGAAAATTATTC

Homology of Contig U35_24521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None