barSeed - Barley Seed Development Database

Probe CUST_692_PI390587928

Source Contig U35_21782

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_692_PI390587928	Hv_44K_v2	ACATTTTGGAATAAAAGGTGGGTTTAAGGGGCTGTTTGGTTCCCTATCTTAGGCAAAAAA	957	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.548	1.523	1.178	0.854	0.400	0.463
Raw	1782.090	2695.568	1838.440	2065.970	352.897	433.735

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367106	2565	3e-21	2512 - 2565	100	54 / 54	plus	None
Harvest35	U35_21782	1028	3e-25	958 - 1017	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_21782 1028 Hv_44K_v2
CACGCGTCCGGGTTGTTGTCCACAACCTTCCTTATTCAGATGCAAGGCGGAATGGAAAGA
TCCAAAATTATTACTTCATCGGCTCTTTCCTAATGTGCGTTATTCACTCTGGATTGATGG
GAAACTTAAACTTGTGAAGGATCCTTATCAGCTATTAGAGAGATTCTTGTGGAGGAAAAA
TGTGAGCCTCGCTATTTCCAGGCATTATAGACGCTTTGACGTCTTCGAGGAAGCTGAGGC
GAACAAGGCTGGTGGGAAGTATGATAATGCTTCAATCGACAACCAAATAGAGTTCTACAA
GAGAGAGGGTTTAACCCATTATTCATCAGCTAAGCTTCCTATTACAAGTGATGTCCCTGA
GGGCTGTGTAATAATAAGAGAGCACATACCCATCACCAATCTCTTCACATGCCTTTGGTT
TAATGAAGTTGACCGCTTCACCTCAAGAGATCAGATAAGCTTCAGCACGGTGAGGGATAA
AATAAGGTCAAGAGTTAATTGGACTGCAGACATGTTCCTGGATTGTGAAAGGCGCGATTT
TGTCGTTCAGGCATACCACAGAGAACTCATGGAGCAAAGGCTGGCCGCCTTAAGGAGCCA
GTCTCCACCGCCGCCTCCCGTGGTGCGCGTGCAACAACCTCGAAAGATGCTCCCAGACAG
CGCACCAAAGGAACCTGGGAGAGCATCAAAGGAGCCCGTGAGAGCTTCCAAGAAGCCAGC
GGGGAAGCGCTCACGGAAATCAGGCTCGAAACGGGCCCATCGAACGAAAGCCGCCGGCGG
GAAGGAACCCATTCGACTGTAAATCTCTCCTGGCGAAATTTTGCTCCCATACAACTGAAG
ATCGACCCGGTTCGGTTTATTTAAATTGTGTTCCTGTTCCACTCCCAAAGGCTCGAAAAT
TTTGTCAGGACTTGTTGATAGAGAGGATTACCACACATTTTTTTGGGGTGTAAATAAACA
TTTTGGAATAAAAGGTGGGTTTAAGGGGCTGTTTGGTTCCCTATCTTAGGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_21782 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g19870.1	606	5e-129	protein\|hydrolase, acting on carbon-nitrogen, putative, expressed
Brachypodium v1_2	Bradi2g19580.1	596	1e-134
Arabidopsis v10	AT1G53040.1	540	5e-96	Protein of unknown function (DUF616) \| chr1:19764567-19766870 REVERSE LENGTH=540