barSeed - Barley Seed Development Database

Probe CUST_6923_PI390587928

Source Contig U35_24528

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6923_PI390587928	Hv_44K_v2	TCTTTGTACTTGGTGTGGTGCATGTTTTGTTCTGTGTTACAACGCTGTTACTCGGTGGAG	316	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36391.3	2239	2e-24	742 - 801	100	60 / 60	plus	ABC17827
MLOC	MLOC_36391.2	2278	2e-24	754 - 813	100	60 / 60	plus	ABC17827
MLOC	MLOC_36391.4	2172	2e-24	652 - 711	100	60 / 60	plus	ABC17827
MLOC	MLOC_36391.1	2201	2e-24	755 - 814	100	60 / 60	plus	ABC17827
JLOC1	JLOC1_23422.1	2011	8e-25	742 - 801	100	60 / 60	plus
Harvest21	ABC19941	376	3e-25	317 - 376	100	60 / 60	plus
Harvest35	U35_24528	377	3e-25	317 - 376	100	60 / 60	plus

Contig Sequence (377 bp)

>U35_24528 377 Hv_44K_v2
ATCGTCGCCATCTCCCTCGCCGCCGAGCGCCTGCTCCACCGCCTCGGCAAGGTGCTCAAA
TTCAATGGCCAAGAAGCACTATTCTCAGCCCTGCAGAGAGTCAAAGAAGAATTGATGATT
CTGGGTTTCATTTCTTTCCTACTAAGCGTCTGTCAAAATCTCATCAATCGCATTTGCATC
CCGGAGAGTGCTGCACGGATCATGCTTCCATGCATTGAAGAGTCCAAAGCCAGAGAAGGT
GCTGCCAAACTCTGCAAGAGAAAGGGTGAAGTTCCCATGCTATCTGAAGAGGCTCTGCAT
CAGCTGCACATCTTTATCTTTGTACTTGGTGTGGTGCATGTTTTGTTCTGTGTTACAACG
CTGTTACTCGGTGGAGC

Homology of Contig U35_24528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10350.1	508	6e-66	protein\|MLO domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g07150.1	497	6e-69
Arabidopsis v10	None