- Probe CUST_6918_PI390587928
- Source Contig U35_36504
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6918_PI390587928 | Hv_44K_v2 | GGAGGCGATGAGACGTTGTAATTACTATTTTCTTCAACAAGATAGGAAAATGGACTAAAA | 286 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.289 | 0.447 | 1.040 | 1.673 | 1.169 | 1.183 |
| Raw | 18.659 | 40.208 | 90.603 | 221.320 | 57.053 | 62.431 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361467 | 2065 | 2e-23 | 2005 - 2062 | 100 | 58 / 58 | plus | ABC11240 ABC17576 |
| MLOC | MLOC_73950.1 | 3071 | 2e-23 | 32 - 89 | 100 | 58 / 58 | minus | ABC11240 ABC17576 |
| JLOC1 | JLOC1_49261.1 | 2259 | 1e-23 | 2166 - 2223 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_36504 | 359 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus |
Contig Sequence (359 bp)
>U35_36504 359 Hv_44K_v2 TGGTGGTCCGGGAATTGCCATTACGGCGGGGGGGGCTCTTCATTCTCGGTGACGTCGGGG TCGTCGGCAGGCACGGTTCGGGACCAGTCACGAATTTGAGCGGCTAGCTTCGCGGGGTGC GTGGGAATCGTTAACTGGACGGATTTCACCAGGAACGCCACGGAGTGAATTTGGGGGGGG AATTAGTGTACGCTGCAGCTGTAGGCTGGTTGTATGATTGTATCTGAGCTTCTTAATAGA GGCTGATGCCTGGTAGATATATAGAGGAGAAAAGAAGACATGTGTTGGAGGCGATGAGAC GTTGTAATTACTATTTTCTTCAACAAGATAGGAAAATGGACTAAAAAAAAAAAAAAAAA
Homology of Contig U35_36504 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |