barSeed - Barley Seed Development Database

Probe CUST_6910_PI390587928

Source Contig U35_12558

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6910_PI390587928	Hv_44K_v2	TTACCATGTGGTCAACTCCTATCTGGTTTGCTGGTGTACCTGTTGTAGCTATGGGTATTG	561	GeneList: darkslateblue MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.724	2.662	1.347	0.667	0.163	0.189
Raw	501.445	1229.042	531.633	412.950	37.590	45.321

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44777.1	1781	2e-24	1613 - 1672	100	60 / 60	plus	None
JLOC1	JLOC1_29041.1	1965	8e-25	1613 - 1672	100	60 / 60	plus
Harvest21	ABC30902	321	3e-25	259 - 318	100	60 / 60	plus
Harvest35	U35_12558	624	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_12558 624 Hv_44K_v2
CGCTATATCACAGGCAAATTACGTACTGGGTGACAACACAATGAAGCTTAGCTACCTGGT
GGGATATGGGAGCAACTATCCACAGCAGGTACACCATAGGGGGGCATCCATCCCCGCGGA
TGCGAAAACGGGCTGCAAGGGGTTCGAGTACCTCCACTCATCCAGCCCGAACCCGAATGT
CGCCATGGGGGCCGTTGTTGGCGGGCCATTTCAGAATGACACTTTCGTGGACTTGCGCGA
CAATGCGGTGCAGACAGAGTCCAGCACTTACAACAGCGGCACCTTCGTCGGCCTACTGGC
TGGCCTGGTCACCACCTCGTCCGTCGCAAAGACATTCACCTAGAGCTCTTTCTCAAGCAA
CGACAATGGTGGCTTTTATCAACCCGGGAAGCATATACAATTAGAGGAATGTTTTTTTTT
TTTTTGGTTCCAAGTGACGGTAATGCGCAATCCAGTGAGACCTGTTTCAGATTTGTTCAT
TGGCCGTCACTTAGGTGGGTGATTAGCAGTAGTCATTAGTGCCACATTACTCTTGCTTGT
ATAATACATATATGGTAATTTTTACCATGTGGTCAACTCCTATCTGGTTTGCTGGTGTAC
CTGTTGTAGCTATGGGTATTGTAT

Homology of Contig U35_12558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36350.1	529	7e-59	protein\|endoglucanase, putative, expressed
Brachypodium v1_2	Bradi4g36240.1	419	6e-61
Arabidopsis v10	None