barSeed - Barley Seed Development Database

Probe CUST_690_PI390587928

Source Contig U35_21784

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_690_PI390587928	Hv_44K_v2	TGATCATGGCCTACATCACAGCAGACATGCTAGACCAAGCAGATGATCTGATCAAACAGA	694	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.301	0.581	1.635	2.275	1.169	1.140
Raw	7.486	21.730	57.607	128.749	23.395	24.568

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67650.3	1157	7e-23	338 - 397	98	59 / 60	plus	None
MLOC	MLOC_67650.2	1548	7e-23	764 - 823	98	59 / 60	plus	None
MLOC	MLOC_67650.1	1612	7e-23	871 - 930	98	59 / 60	plus	None
JLOC1	JLOC1_44688.1	1644	4e-23	773 - 832	98	59 / 60	plus
Harvest21	ABC15706	946	3e-25	702 - 761	100	60 / 60	plus
Harvest35	U35_21784	939	3e-25	695 - 754	100	60 / 60	plus

Contig Sequence (939 bp)

>U35_21784 939 Hv_44K_v2
AGCTCCTGCCCATGGCGTCGCTCGCTGCCCCGGCCTTCCACTCGCTGGCCGCGCAAATCT
CCAGGGCCTCCACCGCGAGGGCGTCTTCGCAGTGCGTGACCGCGCCCGGCCGCCGAGGAG
CGAGGGCGCGGCCTCGGGCGGCGGAGACTGCGCAGGCGGCGGCGGCGGAGACGCCGAGGT
TCAGATGGGATGAACTTGGGACCGGCCTGTCCGATCCCCAGGAGCAGGCGATGCGCGGGC
TGTCCCCGAAGCTGCCCAACCGGTGCAGGGCGCTGATGCCGCGCGTCGTGTCGCTGTCCC
CCGGCGATGAGAACCTCGGCGTGGTCCTTGCGTTCTGGGTGAAGGCCATGAAGCCCAAGA
GGGCCGACTGGTTGCTGGTCCTCAAGGAGCTCAAGGCCATGGAGAGCCCGCTTCTCGCTG
AGGTGCTAGAATATGTGCTGCTGGAGGATTCTTTCGAAGCGAATGTGCGCGACTACACCA
AACTGATACAAATCTACGGCAAGCAAAATCTGTTGCGGGAAGCCGAGGAAGCATTCCACG
CCATGAAAGCCATGAGGCCTCCCCTGTGATCAGGTCATGCTGACTGCACTGGTGGACATG
TACAGCAAGGCCGGCGATCTCACCCGCGCAAAGGAGACGTTCAAAGAGATCGAGCTGCTC
GGCCTACCGATCGACAAGCGCGCATACGGTTCGATGATCATGGCCTACATCACAGCAGAC
ATGCTAGACCAAGCAGATGATCTGATCAAACAGACGGAGGACCAGCAGGTCTTCTCGGCG
AAAGAGGTCTACAAGGCTCTGCTGAGAGCATACTCGTACAGAGGCGATTCAAAGGGGGCG
CAGCGAGTTTTCGACGCGGTGCAGTTTGCGGGGACGGTGCCGGACACGAAGCTGTGCGCG
CTTCTGGTGAACGCCTACTGCCTCTCCAATCGGATCGAC

Homology of Contig U35_21784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46730.2	441	3e-102	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g18720.1	441	1e-109
Arabidopsis v10	AT1G01970.1	409	4e-60	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:338538-339905 FORWARD LENGTH=409