barSeed - Barley Seed Development Database

Probe CUST_6907_PI390587928

Source Contig U35_24531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6907_PI390587928	Hv_44K_v2	CTTACAGTTTTGAACAGAGCAAGCACTTGCTATATTACCCTTACTACTATGTTTTTATCC	1499	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	3.240	3.377	3.099	4.038	3.523	3.498

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70059.4	2302	2e-24	1353 - 1412	100	60 / 60	plus	None
MLOC	MLOC_70060.1	6661	2e-24	3601 - 3660	100	60 / 60	plus	ABC17120
MLOC	MLOC_70060.3	3620	2e-24	255 - 314	100	60 / 60	plus	ABC17120
MLOC	MLOC_70060.2	4455	2e-24	1135 - 1194	100	60 / 60	plus	ABC17120
MLOC	MLOC_70059.3	2342	2e-24	1605 - 1664	100	60 / 60	plus	None
JLOC1	JLOC1_46469.4	2905	8e-25	2563 - 2622	100	60 / 60	minus
JLOC1	JLOC1_46469.3	2870	8e-25	2528 - 2587	100	60 / 60	minus
JLOC1	JLOC1_46469.2	3357	8e-25	3015 - 3074	100	60 / 60	minus
JLOC1	JLOC1_46469.1	3343	8e-25	3001 - 3060	100	60 / 60	minus
Harvest35	U35_24531	1566	3e-25	1500 - 1559	100	60 / 60	plus

Contig Sequence (1566 bp)

>U35_24531 1566 Hv_44K_v2
AGATCGTGGTCATTCATGGACGTGTTGAGGATGTTGATATTGAGGAGAAGGTTGATGTAA
TAATATCAGAATGGATGGGCTATATGCTTCTCTACGAGAGTATGCTGCCAAGCGTTCTAT
TTGCAAGAGATAAATGGCTTAAACCAGGGGGTCTTATCCTACCTTCTCATGCTACGCTTT
TCATGGCACCTATAACAAATTCTGATAGATATGAAGGAAGCGTTGATTTCTGGTGTGATG
TTTATGGCATAAACATGTCTGCTCTTGTGCCACTTGCCAAAAAATTCGCATCCGAGGAGC
CCTCCATTGAAATAGTTGGTGGAGAAAATGTTATAAGTTGGCCATTTGTGGTGAAGCACA
TTGATTGCTACACTTCTACGGTTGAGGAATTCAAGTCTATCACCACAGCATACAAAGTTT
CATCAATGATGTTAGCTCCAATTCACGGCTTTGGTCTCTGGTTTGAGGTGGAGTTCAATG
GGCCTGCAGAGTCTTGTAGCAATTTGTCCTCTGATTCGAGTCCACTTGATATTGTTCAGA
AGAAAAGGCGCAGGGCATCAGATAGCACAGTTGTGCTGTCCACAGCCCCAGAAGATGAGC
CAACCCATTGGCATCAGACAATTTTGTACTTCCCTGATCCTATAGGTGTGACGCAAGATC
AAATCATAGAAGGCTCTGTAACAATCACCCCGAGCGAGGAGAATCCACGCTGTCTGAATA
TTCACTTGGAGTGCTCCACGGGAGGTCAAAACTTGGTGCAGGATTTCGCAATGCGGTGAT
TGGCGTGGTTCCTCAACCTGTCAGTTGAATTACGGGGTAACTAGCCCGTGGGCCCAAGGC
CTAACCCACATTCCCCACTGACCCGAACCGGACCCAAGACCTGGTTGTACTCTCTACTCC
ATTGGTTAAAAAAAAACCCTACCCCATTTAGTAGGCACAGGGCCAGGATTTTTTGGTCGG
AGCAAGTTGCAGGCAGCCGCCCTGTACTTTTGTTATTGTCTGGTAATCATTTTTTTTGCT
GCAACAGTAGACGAAGGCGGTAGTTTGTCTAATAACTGGCTGCAACATTTTTTTGAGATT
ATGTTGAAGTATAATTTTGGCGTGAGCTGTTTTGTTGCTGTTGAGCGGCCGCTCCCGGAA
CTACTTCTCTCTTTCTATACTTGTAATATTCTTACCGCGATGCTTAATATTGCTGCAAAT
TCTTGACATGCAGATTCTTCTGATAAAGAAGGTGAACAACTCTTGGGAAAAAATGGTTAA
GCATGCTAAGGGATGCTGTCTCACAAACATACATGATAGGATCAATGGCAGTCTTCGTCA
ACAAGTTCCATTTGACTATGCGATGAATGACAATCTTCCTGAACAAGGTCTTTCTAGCAC
ACATTCTTCTCCGGATGCAGTCAGTCTTGAGCCGGATGAGGCACTTCAAGGTTAGTTAGA
TACTACCTCCGTCCCCAATTATAAGACGTTTTTTTGGCTATTTTAGCCTACCAAAACGTC
TTACAGTTTTGAACAGAGCAAGCACTTGCTATATTACCCTTACTACTATGTTTTTATCCT
TTTTGC

Homology of Contig U35_24531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58060.1	392	3e-140	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi5g26120.1	389	2e-153
Arabidopsis v10	AT3G20020.1	435	4e-95	\| Symbols: ATPRMT6, PRMT6 \| protein arginine methyltransferase 6 \| chr3:6984055-6987945 REVERSE LENGTH=435