barSeed - Barley Seed Development Database

Probe CUST_6904_PI390587928

Source Contig U35_24534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6904_PI390587928	Hv_44K_v2	CCTGGCACTTCCAATTCAAATTGATGGTTCTCAACTGTGCAATGTTATGTGAAAGTCAAA	564	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.584	1.551	1.108	0.672	0.253	0.272
Raw	1804.090	2724.320	1717.283	1610.456	219.606	256.469

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11252.1	2228	7e-23	414 - 470	100	57 / 57	minus	ABC34490
MLOC	MLOC_11252.2	2217	7e-23	414 - 470	100	57 / 57	minus	ABC34490
MLOC	MLOC_11252.4	2088	7e-23	11 - 67	100	57 / 57	minus	ABC34490
MLOC	MLOC_11252.3	1262	7e-23	11 - 67	100	57 / 57	minus	ABC34490
JLOC1	JLOC1_7435.2	1533	4e-23	1359 - 1415	100	57 / 57	plus
JLOC1	JLOC1_7435.1	1544	4e-23	1370 - 1426	100	57 / 57	plus
Harvest21	ABC34490	638	3e-25	565 - 624	100	60 / 60	plus	ABC34490
Harvest35	U35_24534	638	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_24534 638 Hv_44K_v2
GGATAGTCAAGACACTTCAGTGGGGGTAGAAGATAGAGACCAACCGGAGCCTGAGCTGTT
ACTGGAAATTCGGAGTAACAGTAGTGACGAGGGCAATTGTGCTGTCGGTGTTCCCGTTAT
TATGCCAAACCCAGAAGTTAACTTTACAGTGGACAGTCATGGACCGCCGTATGACAGTGT
TGGTGCAGATCAGTGCAGCGAGAGTTGTGCTATGACTGAGGTTATTAAGACTGTTGCGGC
AGCTCCAGGATCCAAATACAACGGTAAATGCTACGAGCGGAATAGATGGAGCAACGGCCG
TCGGAAACTACAAATGAACGGCTACGGGGTCTCCACAAAATGACCAGAACTGGGTTCATT
CCACCAAAGGTTTGGATCCACGAGGCTTGCAATCTTGTGCAATAAACATTCGGGCAATGT
GCATAGTCAAAAGCTAATTCGCTCTCTCTAGCGAGGGTTGCCTCGCGCAAATCGGTTTCA
AGCACTCATATTATCATGCTGTAAAAGAAAATTGTTGTATTCTGGAAAGAAAAATGTTGT
ATCAGTCTCTCTGGATGTTTTCGCCCTGGCACTTCCAATTCAAATTGATGGTTCTCAACT
GTGCAATGTTATGTGAAAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None