barSeed - Barley Seed Development Database

Probe CUST_6900_PI390587928

Source Contig U35_24538

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6900_PI390587928	Hv_44K_v2	AACCGCCATAGCCACCAAGAATCAAGAACCTTGCCTGCCGCGCGTCGTCCCTGAGGTCCA	83	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357841	1427	2e-24	99 - 158	100	60 / 60	plus	ABC18743
MLOC	MLOC_44975.1	763	2e-24	321 - 380	100	60 / 60	minus	None
JLOC1	JLOC1_29183.1	574	8e-25	296 - 355	100	60 / 60	minus
Harvest21	ABC19531	420	3e-25	84 - 143	100	60 / 60	plus
Harvest35	U35_24538	420	3e-25	84 - 143	100	60 / 60	plus

Contig Sequence (420 bp)

>U35_24538 420 Hv_44K_v2
GAAACCAATTCCATCCTCGCTTTCGCAAGACTCTTCCTTTCTCCCCTTTCCTTTCCCAAC
CCATCGTCGCCCCGGCCCGAGGTAACCGCCATAGCCACCAAGAATCAAGAACCTTGCCTG
CCGCGCGTCGTCCCTGAGGTCCAGGAGGGGATGGAGGGCGGCTGCGGCGTGGCCGGCGGG
ACGGAGGGCGGCTGCGGCAAGAAGCAGCAACAGCAGGCGCGGCCGCAGTTCGGGCGGTCG
CTGACGTACCACCACCACCAGGGGCACCGGCTGCTGCCCAGGTGGCGGCGGCCGCAGCTG
GCGGACGAGCCCCGGGCGCGGCCGCAGGCGGTGGTGCTCTACACGACGTCGCTGCGCGGG
GTGCGGCGCACCTTCACGGACTGCTCCGTCGCTCGGGCCATCCTGCGCGGCTTCCGCGTC

Homology of Contig U35_24538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None