barSeed - Barley Seed Development Database

Probe CUST_6875_PI390587928

Source Contig U35_10196

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6875_PI390587928	Hv_44K_v2	ACGATAATATGTGCGAACAGAATGCACCTGATAGTGCAAAAGCGCCACCTCGTATTGGAA	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248306.1	5440	2e-24	4795 - 4854	100	60 / 60	plus	None
MLOC	MLOC_57988.1	2026	2e-24	307 - 366	100	60 / 60	minus	None
MLOC	MLOC_57988.2	1923	2e-24	307 - 366	100	60 / 60	minus	None
MLOC	MLOC_57988.10	2118	2e-24	275 - 334	100	60 / 60	minus	None
MLOC	MLOC_57988.9	1352	2e-24	304 - 363	100	60 / 60	minus	None
MLOC	MLOC_57988.3	2196	2e-24	307 - 366	100	60 / 60	minus	ABC38206
MLOC	MLOC_57988.6	2079	2e-24	305 - 364	100	60 / 60	minus	None
MLOC	MLOC_57988.5	2200	2e-24	305 - 364	100	60 / 60	minus	ABC38206
MLOC	MLOC_57988.7	2294	2e-24	305 - 364	100	60 / 60	minus	ABC38206
MLOC	MLOC_57988.8	2083	2e-24	305 - 364	100	60 / 60	minus	None
MLOC	MLOC_57988.4	2195	2e-24	305 - 364	100	60 / 60	minus	None
JLOC1	JLOC1_37645.9	1685	8e-25	1011 - 1070	100	60 / 60	plus
JLOC1	JLOC1_37645.8	2278	8e-25	1604 - 1663	100	60 / 60	plus
JLOC1	JLOC1_37645.7	2265	8e-25	1591 - 1650	100	60 / 60	plus
JLOC1	JLOC1_37645.6	2395	8e-25	1721 - 1780	100	60 / 60	plus
JLOC1	JLOC1_37645.5	2255	8e-25	1581 - 1640	100	60 / 60	plus
JLOC1	JLOC1_37645.4	1640	8e-25	966 - 1025	100	60 / 60	plus
JLOC1	JLOC1_37645.1	2261	8e-25	1587 - 1646	100	60 / 60	plus
Harvest21	ABC19825	543	3e-25	431 - 490	100	60 / 60	plus
Harvest35	U35_10196	545	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_10196 545 Hv_44K_v2
TTTGTTGGTCATGGGTCCCTAGAGGATACATGTAAACCTGAATGCTCTACATCAACAATC
ACAGATGCTGCTTCCACTGAACCTATCTGCACTTTCGAGAAGACTGATATTGTTAGTGCT
GAAGGATTTGATGAAATCGAAACAAGTGAACCCAGGGTGAATGCTCTGAGTTCGATAGGT
TCAGAGATCCAATTGTCTGCAAAGAGCAATGATCAGAATGGAAGTATTATGGGTGAAACA
ATAACCAACAACGTGCATGAAACAGAAGCAGCTACAACTTCATCTGCTGACAATGTAGAG
GCCAATGATGCAAATTGGGAGAATAGTGAAAAACATGAGACTGGCGGTACCGCTGATATA
CATGATTCCAGCCAGATAGATGAAGGAACTAATAATGACGCGGTTAGTAAGAGTTCTCTG
CTGGCACAACACGATAATATGTGCGAACAGAATGCACCTGATAGTGCAAAAGCGCCACCT
CGTATTGGAAACGGCTATCCTCCCTTTGAACCGGGCTTGTTTGGTCCTAGTATTATGTCT
GCTCC

Homology of Contig U35_10196 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g47127.1	509	1e-55
Arabidopsis v10	None