barSeed - Barley Seed Development Database

Probe CUST_6864_PI390587928

Source Contig U35_22173

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6864_PI390587928	Hv_44K_v2	CACAAGTGTTTGACCATGGTTCCATATCTTTTGGAAGATTTGATTTGGAATCGCTAGCAT	623	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.720	0.728	1.823	1.547	1.458	0.904
Raw	12.721	18.916	45.518	50.138	19.174	13.251

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61186.3	2453	2e-24	1943 - 2002	100	60 / 60	minus	None
MLOC	MLOC_61186.2	2997	2e-24	2503 - 2562	100	60 / 60	minus	ABC39319
MLOC	MLOC_61186.1	3013	2e-24	2504 - 2563	100	60 / 60	minus	ABC39319
JLOC1	JLOC1_39972.2	3054	8e-25	437 - 496	100	60 / 60	plus
JLOC1	JLOC1_39972.1	3039	8e-25	431 - 490	100	60 / 60	plus
Harvest21	ABC39318	509	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_22173	683	3e-25	624 - 683	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_22173 683 Hv_44K_v2
AGAAACAAATCAAATCCACGACAGCCACCCCTCTCTCCCAACCGTAGGGCAAAGCCAGAG
CAGCAGCAGCAGAGGGCACGGGCCGCTCGCCACAGCCCACAGTTCTTGCTCCCGCGGGCG
GTTCCTCCCCCGGATCTGAGGCGCCGCGCTCGCCGGATCGCCGCCCGGTTCCAGTCAGGG
GCTGAGTTCCCGCCCGTGCTCCACGGCGGGGGCCTGTCCGAGCCGCCAGCATCTCGTGCC
ACCACTCCCCGGCAGCTACACTTTCCCTTCTCCTCTCCACCATCTTGTACTACCTTTCTT
TCCTCTTGCCCCTGGCCTACCCTATAGGCTCCACTCCGACCCAATGCGGGTCTAGAGTCT
CCCCCGCAGTGCGCCGCCGCTGTGCCCTAAGGCTTCCTTCCTTCCGCCTCGCCGTCCCGC
TGTTCTGCCTCGTCGCTGCACAGCCGCCCTGCCGTGCTGCCTCCACTCCACTGCACTGCG
CCCTCGATCTTGTGCGTCGGTTTTTGAGGAATTGTAGTTTAATGAATTAGGCACACAATA
TACTATGGCAACAGAGGTCAATCAAAACTGTTTTGCATGGCCGCATGAGGAATCATCTGG
ACAGGATAGTTCTCAGGGAACAACACAAGTGTTTGACCATGGTTCCATATCTTTTGGAAG
ATTTGATTTGGAATCGCTAGCAT

Homology of Contig U35_22173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None