barSeed - Barley Seed Development Database

Probe CUST_6862_PI390587928

Source Contig U35_22176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6862_PI390587928	Hv_44K_v2	TTTAACATAGGTGACAATAACATTGCTACACATGAGACCAGGTCAGGTGTGACTGCCTAG	780	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371818	902	2e-24	795 - 854	100	60 / 60	plus	ABC17204
MLOC	MLOC_58253.3	1514	2e-24	497 - 556	100	60 / 60	minus	ABC12111 ABC17204
MLOC	MLOC_58254.1	1062	2e-24	221 - 280	100	60 / 60	minus	ABC17204
MLOC	MLOC_58253.2	3066	2e-24	1460 - 1519	100	60 / 60	minus	ABC12111 ABC12112 ABC17204
JLOC1	JLOC1_37828.2	1630	8e-25	783 - 842	100	60 / 60	plus
JLOC1	JLOC1_37828.1	1486	8e-25	639 - 698	100	60 / 60	plus
JLOC1	JLOC1_37827.1	2141	8e-25	1458 - 1517	100	60 / 60	minus
Harvest35	U35_22176	876	3e-25	781 - 840	100	60 / 60	plus

Contig Sequence (876 bp)

>U35_22176 876 Hv_44K_v2
GTCAAAACAGGAAAGAGTGTGCTAGGGTTCGGCGATCCGCGCGCCGCTGACCACTCGCCG
GCGGCCACCGCGATGCCCGGCAAGAAGAACGCGGAGCCGGCGCCGGCGCCGGCGCCGGCG
ACCGCCGCCTTCCAGCCCCAGCTCCCGCCGATGCCGCGCGCCAAGGTGTTTAGGTTGAAC
GATGGCGGCGGGTGGGACGACTACGGAGCCGGCCTTGTCACCGTCGACTACCTCGAGGGA
TTGGCATCGGCCCACGAAGCCGTCCTGGCGGTCATAGACCCGGAGGACAAGGAGGCGATG
CTTTTGCATCGCATCACCCCGGACGACATTTACAGGAGGCACCGAGGGACGCTCATCTCC
TGGAGCGATCCTGTGTCCGGCATGACCCTCTCCTTGAGCTTCCGAGACGCGGCAGCGTGC
TCCGATGTATGGGACACAATCTGCCAAGTGCAGAGGAAACTGAGGCCTGATAGTTGATAG
TTACCCATGCTCAAGAAAAGTTTTTCCTTGAAGCAAGCTCATGAGTTGGGAAATTTAGCC
TATGGAATGAAGCAGAGTAAAATACCAGACATCGAGGCTCGAGATCTGAAACCAATCAAC
CACCTCTGTTTTTTTTTCTCCAGAATTTCTAGAGAATTAGGATGTCATCTTTTGCAGTGC
CATTAATTTCCTGCAATAAGAATAGCTAAACAGCAGTTTGTCATGTTTAATGGTATATCT
TTTTTCGAGGAATTATTCTTGTGATTATGGTTTTTAGAGCTGCATCAACATTGCTCTATA
TTTAACATAGGTGACAATAACATTGCTACACATGAGACCAGGTCAGGTGTGACTGCCTAG
TGCAGATTCATGTTTATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_22176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None