barSeed - Barley Seed Development Database

Probe CUST_6861_PI390587928

Source Contig U35_22177

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6861_PI390587928	Hv_44K_v2	CGGGTTTTTTAAAACTCAATCGAAATTTAATCAAGTCTCAGTCGGCCTTGCAACAAAAAA	554	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80690.1	897	9e-22	38 - 92	100	55 / 55	minus	ABC21002
MLOC	AK360350	1601	3e-21	1548 - 1601	100	54 / 54	plus	ABC21002
JLOC1	JLOC1_53729.1	898	5e-22	38 - 92	100	55 / 55	minus
Harvest35	U35_22177	625	3e-25	555 - 614	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_22177 625 Hv_44K_v2
GCCGACGAGGAGCAGGGCGCCGGCGTCTCGCCGCCGCCGAGGCTGTTCGTGATGGGGCGG
TACCTAGGCGGCGCGGAGGTGTGCACGGAGCTGGTGGAGAGCGGGAAGCTGGCGGAGATG
CTGCGTTGGGCCCGGGCGCGAGGGGAAGCGTGCGCGGCCAAGGACGGCCGCGGCTGCGAG
GGGTGCGGCGGGGCGCGGTTCGTGCCGTGCCTGGAGTGCGGTGGCGGCTGCAAGGTGGTG
GTCGGCGGCGACGGTGGCACTGGCGGCGTGGTCGAGAGGTGCGGCAAGTGCAACGAGAAC
GGCTTGATGATGTGCCCCATCTGCCACTGATGGAGCTCCGAACCTTCATCCATGTATCTG
TGCATACGTACACAAAACATGCCGTTGCCTTCCGCGTTCGAGCATAAATCAAAGCATGTT
CTCTGTAGTATATAGAATACAGTACAGTTTAATAAGAACAGGGTATTGTGTGTTGAACCG
AAAAGGAAAACTTCGGCGTGTGTTGTGTAGCTTTGGCAGTCAGGGTAATTGATTGAGTAA
TCTCTTCTGTAAACCGGGTTTTTTAAAACTCAATCGAAATTTAATCAAGTCTCAGTCGGC
CTTGCAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_22177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None