barSeed - Barley Seed Development Database

Probe CUST_6856_PI390587928

Source Contig U35_34158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6856_PI390587928	Hv_44K_v2	AGGAACCATCCTTTATGTACCGCTGAAAGGAAATTGCATTATTAAAATACAGGTTTTGCA	633	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.193	0.978	1.191	1.149	0.571	0.472
Raw	777.614	1014.780	1076.325	1599.158	284.135	253.609

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15470.1	3194	3e-22	2570 - 2628	98	59 / 60	plus	None
JLOC1	JLOC1_10615.1	2877	6e-21	2556 - 2608	100	53 / 53	plus
Harvest35	U35_34158	693	3e-25	634 - 693	100	60 / 60	plus
Harvest35	U35_12032	1020	5e-23	937 - 995	98	59 / 60	plus

Contig Sequence (693 bp)

>U35_34158 693 Hv_44K_v2
GGCGAATTGGGCCTTCTAGAGCATGCTCGAGCGGCCGCTCGTACAGATCCTTATTTTCAA
GATGGATTACATACGTAGACCTATAGTAGCGCATGCAACATACGTAGGCACAGTGCACGT
GCTGGCCAATATTACAAACTTTGACAAATTAAAATGGATGGATCTGGAATTCTAGATTTA
AAGCAAGTGAGCTTTAATCAGTCGATCTACCACCTTTCATAAGAGGAAAGACTGGGCGTG
TTGCAATGCCACACTGCCCTGATGAATGCTTTGTTCCCCTCTTCATTAGTATGTAGCCTT
TGTCGCCCAGCGGCCGCTGGAGCCACGAGAAGGACTTCGAAGCAGCAGTGGATGATGTTA
AGAAGATTAATGGCGTGATTGGAGTCCATAATGTTCATTTATGGAACTTGACAAACACCG
ATATTGTAGGCACTTTTCATCTTCATATATCAGCCGAAGCTGATAAGTCTGTTATAAGAG
AAAGTGCTTCACGGATATTTCAAGAAGCTGGGGTTCAAGATCTGACTATCCAGATTGAAT
GTGTCGAAAGATAGCAGTTGTAGGTATAGCGACACTTGTCGGTAGTGTGATAGGATTTTG
GCAGAGAGCAAATATATCTGTAGTGCTTAATGCAGGAACCATCCTTTATGTACCGCTGAA
AGGAAATTGCATTATTAAAATACAGGTTTTGCA

Homology of Contig U35_34158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None