barSeed - Barley Seed Development Database

Probe CUST_683_PI390587928

Source Contig U35_19470

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_683_PI390587928	Hv_44K_v2	CCACATTATTTGTTGTTGTACACACATGCAAGAGAGACTAGAAAATACGAGTAAATAGCA	700	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.020	21.439	2.211	0.371	0.447	0.398
Raw	152.094	549.359	45.119	11.363	3.642	3.066

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72007.2	1677	2e-24	83 - 142	100	60 / 60	minus	ABC10719
MLOC	MLOC_72007.1	1334	2e-24	90 - 149	100	60 / 60	minus	ABC10719
MLOC	MLOC_72007.3	1674	2e-24	83 - 142	100	60 / 60	minus	ABC10719
MLOC	MLOC_72007.4	1256	2e-24	11 - 70	100	60 / 60	minus	ABC10719
JLOC1	JLOC1_47894.2	1705	8e-25	1505 - 1564	100	60 / 60	plus
JLOC1	JLOC1_47894.1	1695	8e-25	1495 - 1554	100	60 / 60	plus
Harvest21	ABC10719	776	3e-25	701 - 760	100	60 / 60	plus	ABC10719
Harvest35	U35_19470	776	3e-25	701 - 760	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_19470 776 Hv_44K_v2
GCACCAGCGACACTGAGGTGCACGACAAGGACAGCAAGGACGCCACTGAGAAAGACACAG
ACAAAGACAAAGAGGGGCAGTCGTCGCAGCCGAACCGGAAGCCACGGCGGTGCTGGGCGC
CGGAGCTCCACCGCCGGTTCCTGCAAGCACTGCAGCAGCTGGGCGGGTCCCACGTGGCGA
CACCGAAGCAGATCCGGGAGCTGATGAAGGTCGACGGCCTCACCAACGACGAGGTCAAGA
GCCATTTGCAGAAGTACCGTTTGCACACGTCAAGGCGGCCGAGCTCCACGGCCCAGAGCA
GCGGCGCCGCCACCACCACTCAGCCCGCGCCGCAGTTCTTCGTGGTGGGCAGCTGCATCT
GGGTTCCCCAGCAGGAGTATGCCGCTGCGGCCGCCGCCGCGGCAGCAGCAACAGATGCAA
CAAATGTGGCGCCGGGAAGCGCGAACAAAGTATACGCTCCGACGGCGACGTTGCCATCAG
GGGTGAAGCCACACTCAAAAGAGCAGTCGAGTAGGCGGTCGGAAGGCCCGATGAGCGGCG
ACACGGGCGGCGTTAACTCGGACTCGGACAACCCAGCTATGTCGTCGTCGTCGTCGCAAA
CCACATCTGCAGGGCATCCTTAGCGTATAACCTTCGGAGTTGGGACCTACATAGCCTAGA
GAAATAGAGTGTATAAGATCACATTTTGCAGCAAGGTAGGCCACATTATTTGTTGTTGTA
CACACATGCAAGAGAGACTAGAAAATACGAGTAAATAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22020.1	413	6e-51	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None