barSeed - Barley Seed Development Database

Probe CUST_6838_PI390587928

Source Contig U35_22188

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6838_PI390587928	Hv_44K_v2	GCTGATGGCGTCAACTGCATATGATGTTCTGTTGGTTAATAGACATATTTTCTGTCATGA	483	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.681	2.880	1.171	0.672	0.570	0.391
Raw	57.885	100.372	34.732	32.090	9.412	5.680

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_22188	562	3e-25	484 - 543	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_22188 562 Hv_44K_v2
GAGGGGGTTCCAGACTGGTGGATTACAAACCAAGGATGGAAAAGATATGGTGCTTTTGGG
AGATCTAGCATTTTCAAACAGACTTGTTCTTTACGATTTAGAAAATCAAGTTATTGGATG
GACCGATTACAACTGCTCGTCCAGCATTAAAATCAAGGATGACAAGACTGGATCAATATA
CACTGTGGATGCACATGATATCTCATCTGGATGGAGATTTCAGTGGCACAAGTCCTTGTT
TGTATTGCTAGTAACGGCGCTGTGCAGCTATACAATGTTCTAACTTGACTGCGGATCCTC
ATAACTCTGTATGCTTGTAGCAATTTTGTTGTATTTTGTTCTTAGTCCTTACAGAGAAAG
GGAAGGATAGGGGCTAGATTATATACACCTATGTTGTCTTACGAAAATGGGGGGAAAGGA
AAGGAAATACACTGATTTTCATGTCAATAATATATATGGAAAATATTTGCCCAAGAATTA
TTTGCTGATGGCGTCAACTGCATATGATGTTCTGTTGGTTAATAGACATATTTTCTGTCA
TGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None