barSeed - Barley Seed Development Database

Probe CUST_6837_PI390587928

Source Contig U35_22189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6837_PI390587928	Hv_44K_v2	TCCTGAAAGTATATCGGCTAGTGAGACTTCAGATTCTAGTTATGCTAAAGAACCTGAGAA	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248976.1	1889	2e-24	286 - 345	100	60 / 60	plus	None
MLOC	MLOC_44323.1	2108	2e-24	1148 - 1207	100	60 / 60	minus	None
MLOC	MLOC_44323.6	2043	2e-24	1122 - 1181	100	60 / 60	minus	None
MLOC	MLOC_44323.4	2134	2e-24	1120 - 1179	100	60 / 60	minus	None
MLOC	MLOC_44323.7	1345	2e-24	630 - 689	100	60 / 60	minus	None
MLOC	MLOC_44323.3	2143	2e-24	1129 - 1188	100	60 / 60	minus	None
MLOC	MLOC_44323.2	2416	2e-24	1125 - 1184	100	60 / 60	minus	None
MLOC	MLOC_44323.5	2162	2e-24	1148 - 1207	100	60 / 60	minus	None
JLOC1	JLOC1_28714.9	1758	8e-25	852 - 911	100	60 / 60	plus
JLOC1	JLOC1_28714.8	2664	8e-25	956 - 1015	100	60 / 60	plus
JLOC1	JLOC1_28714.7	2623	8e-25	910 - 969	100	60 / 60	plus
JLOC1	JLOC1_28714.6	2618	8e-25	887 - 946	100	60 / 60	plus
JLOC1	JLOC1_28714.5	2473	8e-25	850 - 909	100	60 / 60	plus
JLOC1	JLOC1_28714.4	2455	8e-25	850 - 909	100	60 / 60	plus
JLOC1	JLOC1_28714.3	2450	8e-25	850 - 909	100	60 / 60	plus
JLOC1	JLOC1_28714.2	2473	8e-25	742 - 801	100	60 / 60	plus
JLOC1	JLOC1_28714.1	2450	8e-25	742 - 801	100	60 / 60	plus
Harvest21	ABC16302	621	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_22189	621	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_22189 621 Hv_44K_v2
GTTGAGAGGACTCCTTCCATGAGTGATCTAAATGAAGTGATATTTGGGCAGGAACATCTG
TGCCGAGATGATTTGTCCTTTATCTTCTTCCTAAAGGTATCAGACAATGCACCACTATAT
GGTGTTTGCCTTCATGTCCAGGAAATTGTTCAAAGGGCCCCTGGTATACTAGGAGCAGTC
TCACCCCTAAATCAGACTTCCTACAAGCCAAGCCGTTTCTTGGTTTCTGCACCACGTTGT
TACTGTTTACTTACAAGAGTACCTTTTTTTTGAGCTACATTATGAGATGTTAAACAGCAT
AATTTCACAGGAGAGGCTTGAAAGGATAACACAGTTTGCCAGTGAAATTGCTCTGGCAGG
GCCAGTCCCCCGTTCCTTGAGAGAGCAGTTACAAGATCAATCAGATGGGGATTTTGAATC
TCCAAATGGGCTTTCGTACAATGACTGGACAGAATATGCTGTACCCGTCAACAGTATATC
AGGTCTTGTTTCTTCACCAGGACTTACATCAGAAAGAGACGCCCCTTCATATTTGTTCAG
GAATTGGGAACCTAATTCTCCTGAAAGTATATCGGCTAGTGAGACTTCAGATTCTAGTTA
TGCTAAAGAACCTGAGAAGGA

Homology of Contig U35_22189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g75390.1	921	6e-52
Arabidopsis v10	None