barSeed - Barley Seed Development Database

Probe CUST_6833_PI390587928

Source Contig U35_34168

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6833_PI390587928	Hv_44K_v2	TTGTTCTTGTGGCGACTTCTGGTGAATGGTTCTCCCTTCATGAAACTTAATAGAGGATTA	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65093.1	3712	3e-22	797 - 856	98	59 / 60	minus	ABC49776
JLOC1	JLOC1_42807.1	3477	1e-22	569 - 628	98	59 / 60	minus
Harvest21	ABC49776	659	5e-23	321 - 380	98	59 / 60	minus	ABC49776
Harvest35	U35_34168	296	3e-25	49 - 108	100	60 / 60	minus
Harvest35	U35_48034	659	5e-23	321 - 380	98	59 / 60	minus

Contig Sequence (296 bp)

>U35_34168 296 Hv_44K_v2
ACTCCTATAGGGCGAATTGGGCCCTCGGATGCGTGCTCGAGCGGCCGCTAATCCTCTATT
AAGTTTCATGAAGGGAGAACCATTCACCAGAAGTCGCCACAAGAACAAGATCCACCTCTG
AAATGGTGGAATCTGTTGGCGTCGCGGACCACGATTTCCCTCTCGAGCAGCTTCGACACT
AGCTTGGTGAACTCATGGCAGTCGCCGCAAACTCTGAGGTTCTTGGCTATCCTTAGAGGC
GTACCTGGACGTGTGCTGATCAAACCAAACGCAATGGCAAGCCTCTCGCTGTGCCT

Homology of Contig U35_34168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None