barSeed - Barley Seed Development Database

Probe CUST_6830_PI390587928

Source Contig U35_46142

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6830_PI390587928	Hv_44K_v2	TTGGAGTATAACTTATTGATGCAAAACATCCATGTGTTACAGAGTAGTTTGACTGGGGGG	90	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12452.3	2013	9e-22	1472 - 1526	100	55 / 55	minus	ABC45698
MLOC	MLOC_12452.4	2057	9e-22	1472 - 1526	100	55 / 55	minus	ABC45698
MLOC	MLOC_12452.5	1856	9e-22	1265 - 1319	100	55 / 55	minus	None
MLOC	MLOC_12452.6	1789	9e-22	1145 - 1199	100	55 / 55	minus	None
MLOC	MLOC_12452.2	2113	9e-22	1469 - 1523	100	55 / 55	minus	ABC45698
MLOC	MLOC_12452.1	2067	9e-22	1488 - 1542	100	55 / 55	minus	ABC45698
JLOC1	JLOC1_8355.2	2127	5e-22	590 - 644	100	55 / 55	plus
JLOC1	JLOC1_8355.1	2086	5e-22	533 - 587	100	55 / 55	plus
Harvest21	ABC45796	281	3e-25	91 - 150	100	60 / 60	plus
Harvest35	U35_46142	281	3e-25	91 - 150	100	60 / 60	plus

Contig Sequence (281 bp)

>U35_46142 281 Hv_44K_v2
GGTGCTCTTGACAGAAATGCGCAGTTCGACATGATCTACGAGGACATGTCTTCTTGGATT
AATGTAGCACACACAAGCAGCAGCAGCAGCTTGGAGTATAACTTATTGATGCAAAACATC
CATGTGTTACAGAGTAGTTTGACTGGGGGGGAGGGGGTGATGCTGGAGAGAGATATCCTT
GTACATATTGAACAGCTTGGAGCTCTGAATTGGTTTAACGCCTCGAGGTCCAGCGCCACC
ATAACACCGACCTCACTTGAATCAGATTTTGCACTCATTTG

Homology of Contig U35_46142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None