barSeed - Barley Seed Development Database

Probe CUST_6826_PI390587928

Source Contig U35_22190

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6826_PI390587928	Hv_44K_v2	TACGAAGATGTTGGATACAGTTAGTATGCAGTTTGACAGTGAAGGAAATTTAGCTTGTGA	1317	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.763	3.773	1.173	0.756	0.276	0.327
Raw	159.931	248.028	68.123	69.756	8.948	11.423

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60326.1	1258	7e-23	22 - 81	98	59 / 60	minus	ABC24922
MLOC	MLOC_60326.2	2675	7e-23	22 - 81	98	59 / 60	minus	ABC24922
JLOC1	JLOC1_39324.1	2403	4e-23	2328 - 2387	98	59 / 60	plus
Harvest35	U35_22190	1398	3e-25	1318 - 1377	100	60 / 60	plus

Contig Sequence (1398 bp)

>U35_22190 1398 Hv_44K_v2
TTCTCTTAGAGTAAAATTTGTTTGGGATAACAACGGTTGGTCCTTCACGCCCAAGCGATC
GATTCAACGGCCTTAGCTTGTCCCGTTGACGTGTAATTCGAACGCTAATTTCTTCCCCGA
TCGATCAATTAAGTAAGACAATAATAAATAAACTCTTTTTATTGCTTGTATGTAGGCTGT
GGAGATCGGCAAACAATTTGCGAGAAAGCACTTCATCCACCATGTCTTCAGGGAGAACGA
CTTCGAGGACGGCAGCCAGAGCCTGTACCGCTTCCTGGAGCACGACCCGGCCGTCCCCAG
GTACCACAACTTCAGGGGCTCCACCAACGACGGCGAGCCCAAGCCGGCCGCCGCCGTCGG
CCAGAGGATGACCAAGATCATGGTCGCCATCCTCGAGGCCTACGCCTCCGACGACCGCCG
CCGCCTCGACTACGCCCGCGTCGCCGCCAGCGAGGAGTTCAGGAGGTACGCCAACCTGGC
AAGGGACCTCCAGCGGGCCGATGTCTTCGCCCTGCCCGCCGGGGAGCGCCTCTCCTTCTT
CCTTAACCTGCACAACGCCATGGCCATCCACGCCGTCATCAGGACCGGCCAGCCGGCGGG
CGCCGTCGACCGCCGCTCCTTCTTCACCGACTTCCAGTATGTCGTCGGCGGGTACCCATA
CTCCCTCACGACCATCAAGAACGGCATCCTCCGCTCCAACCGGAGGCAGCCCTACACCAT
TATCAAGCCGTTCGGCGCCTCCGATAAGAGGCTCGAGCTGGCGGAGACGAAGGTGAACCC
GCTGGTGCACTTCGCGCTGTGCAACGCGACGCGGTCGAGCCCCACCGTGCGGTTCTACTC
CACGCAGGGCGTCGAGCCGGAGCTCCGGCACGCGGCCAGGGAGTTCCTCCTCGACGGCGG
CGTAGAGATCGACCTCGAGACCCGGACCGTCCACCTCACCAGGATCGTCAAATGGTACAG
CGCCGATTTCGGGCAGGACAGGGACATCCTCAGGTGGATCCTCAACTACCTGGACCCGAC
CAAAGCCGGACTCCTGACGCATCTCCTCAACGACGGCGGACCGATCAGCATCGCCTACCA
GGACTACGACTGGTCCCTGAACGCCTGAACCGAATTCTGTTTCTCTTTGGATATTGGCAA
ATGGTCGATGGAAGAGAATTACAGATCAACCGCGCGTGGAGCTTATTACTAGCAATTATA
CGTACTTAGCTACAAGGAAGTCTGAAGGTGTACATATATACTATGAGCCTCTTGTATGGT
TTCCTGCAGGGACAAGTTTGTCTCGGGTAGGGAAATGCACTGTATTGCATTTTTCGCTAC
GAAGATGTTGGATACAGTTAGTATGCAGTTTGACAGTGAAGGAAATTTAGCTTGTGAAAA
AAAAACATTTTTGAAAAA

Homology of Contig U35_22190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34170.1	705	1e-177	protein\|glutaredoxin domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g29080.1	701	0.0
Arabidopsis v10	AT3G11920.1	630	1e-125	glutaredoxin-related \| chr3:3772311-3774887 FORWARD LENGTH=630