barSeed - Barley Seed Development Database

Probe CUST_6817_PI390587928

Source Contig U35_22199

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6817_PI390587928	Hv_44K_v2	GACAATGACTAGCATTTAGTACAACAATGTAGCACGATAAAGATGAGAAATTAAGCACAC	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79028.2	1440	2e-24	494 - 553	100	60 / 60	plus	ABC03470 ABC24431
MLOC	MLOC_79028.1	4413	2e-24	3682 - 3741	100	60 / 60	plus	ABC03470 ABC24431
JLOC1	JLOC1_52664.1	5138	8e-25	2148 - 2207	100	60 / 60	minus
JLOC1	JLOC1_52662.1	4440	8e-25	3456 - 3515	100	60 / 60	plus
Harvest35	U35_22199	663	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_22199 663 Hv_44K_v2
GCACGAGGCCAAGCCGATGTCGAACCTGGTGGAGTGGGGGCTGCACTGGCAGGGCAGGGG
CGAGCTGGAGAAGATCGTGGACCGGCGCATCGCCGCCGCGGCCAGGCCAGCGGCGCTGAG
GAAGTACGGCGAGACGGTGGCCAGGTGCCTGGCGGAGCGCGCTGCCGACCGGCCGACCAT
GGAGGACGTGGTGTGGAATCTGCAGTTCGTGATGCGGCTGCAGGAGGGCGACGGCCTGGA
CTTCTCCGACGTGAGCAGCCTCAACATGGTGACGGAGCTCAGGCCGCCTCGCCGTCAGAG
AAACTCAGTGGATTGCGACGGCCTGGACCTCTCCGACGTGAACAGCCTCAAACTGGTTAC
GGAGCAAACGCAGCCTCAAACCGGCAGCGTGGAGGGAGACGGTGTAGCCGACGACGATTT
CACAGACGCATCCATGAGAGGGACCTTCTGGCAGATGGTCAATGTCCGCAGCAGATGAAC
CACATTGCTTTGTATGAAAAGATGGTGGTGTTTTTTGTACGTCCCTAAGAAAAGTGGATG
ATGGAAAAGATTGTGGTCCCCCACCATCGTTCAAGGACAATGACTAGCATTTAGTACAAC
AATGTAGCACGATAAAGATGAGAAATTAAGCACACAAGATTATTTTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_22199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None