barSeed - Barley Seed Development Database

Probe CUST_6813_PI390587928

Source Contig U35_34175

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6813_PI390587928	Hv_44K_v2	CCAGTGTCAGTCAGTTCATTGCAGTCTCTAATTGAGCTCAATCTGGCAGATAATTCCCTC	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60385.1	3500	2e-24	1640 - 1699	100	60 / 60	minus	ABC15860 ABC39727
JLOC1	JLOC1_39372.1	3443	8e-25	1745 - 1804	100	60 / 60	plus
Harvest35	U35_34175	487	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (487 bp)

>U35_34175 487 Hv_44K_v2
TGTGAGGGAATTATCTGCCAGATTGAGCTCAATTAGAGACTGCAATGAACTGACTGACAC
TGGAATGGCACCGCTGATCTTGTTCCCTTGAAAATTCAAGTTGGAAAGCTTTGGAAGGTT
GAAAATTCCCATTGGTATCTCTCCCGTGAATGAATTCAGACTAAGATTCAAAGTGTTCAG
GTTTGTTAAATCAGAAAATGTACTTGGGATAGATCCCCTGAGATTGTTCATTTGAAGCTT
CAGAACTACCAGCTTGTCAAGGTTACTGGTTGCATCAGGCACTTGACCCTGAAAATGGTT
CGATGCCAGATTCAACAAGGACAAGTTCCTGCATCTTCCAAGCTGTGAAGAGATATTTCC
CATCAAGTGATTGTTGTCCAACTCAAGATAAGCCAGGGCCAAGGCATCACCTATGGTGTC
CGGGATGGTCCCATTGAGCTTGTTATCACCAAGCCTCAAGCGGTAGAGGTGTGAAGATAA
GTTCCTA

Homology of Contig U35_34175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g40990.1	968	3e-52
Arabidopsis v10	None