- Probe CUST_6810_PI390587928
- Source Contig U35_34179
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_6810_PI390587928 | Hv_44K_v2 | GGTCCACTATCTGAACCATATGATATCCCGTCTGTTTCTGCACCAATTTATTGTAATAGT | 4 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.575 | 1.343 | 1.008 | 0.960 | 0.417 | 0.323 |
| Raw | 474.162 | 632.928 | 419.729 | 650.998 | 97.590 | 81.039 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_8303.1 | 757 | 2e-23 | 672 - 729 | 100 | 58 / 58 | plus | None |
| JLOC1 | JLOC1_5510.1 | 772 | 1e-23 | 627 - 684 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_34179 | 332 | 3e-25 | 5 - 64 | 100 | 60 / 60 | minus |
Contig Sequence (332 bp)
>U35_34179 332 Hv_44K_v2 TAAAACTATTACAATAAATTGGTGCAGAAACAGACGGGATATCATATGGTTCAGATAGTG GACCAATACACTTTTAACATGATAGAAGCCAACTCATGCTTTAGCTGACGTCGAACACAT CCATGTATCTTAGCTTTGAAGGAGTAACAACGCTCAACGTTATTACTACCAAACCGGAAC TTCAACTTCATAACAGTGCCCGACGTGACTGCAACTACAAATCTTCTCAGGCCACGCGAC TGATCAACAGTACCATGAAAAAGAGGAATTTCTTCATAGTTCTCCTTAATATAAACCAAG GAACTCAGAGATAAACTGAAGCCACTATGTAC
Homology of Contig U35_34179 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |