barSeed - Barley Seed Development Database

Probe CUST_67_PI390587928

Source Contig U35_7804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_67_PI390587928	Hv_44K_v2	AGCAGGGGCGGCACGAGAGCTACAGCTCCCTGGTGCTGGCCCGCCTGCGCCGCGACTCGG	395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376053	2060	2e-24	397 - 456	100	60 / 60	plus	ABC11988
MLOC	MLOC_13816.1	1829	2e-24	1262 - 1321	100	60 / 60	minus	ABC11988
JLOC1	JLOC1_9391.1	2145	8e-25	1416 - 1475	100	60 / 60	minus
Harvest35	U35_7804	545	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_7804 545 Hv_44K_v2
GTGCTTCACCGCTGGCTGCAGTGACGGACCGACGCCTACATTCATTCCCATTCCCCCCTC
CCACGCCCGCGCCACCACAGCAGAGCCAGCCTTCACACCACTCCACTCCAACCACCAGCC
CACAATGCAGCCCCTCCTCGGGCTACCCCTCCTCGCCCTGCTCCTCCTGGCCTCGCCGGC
GCCGGCGCTCTGCCGCCACCCCGCGCCCGCCAACACCGAGACGCTCGATGTATCCGCGTC
CCTCTCCCGCGCCCGCGCCGCCGTCTCCACCGACGCGCGCCCCCTCCTCCACCAGTCCCT
CGCCTCCACCGACACCGACGCCCTCGTCAAGGAGGAGCAGCGCTCCGGCGGCAAGCTCGC
GCTGCGGCTCCACTCCCGGGACTTCCTCCCGGAGGAGCAGGGGCGGCACGAGAGCTACAG
CTCCCTGGTGCTGGCCCGCCTGCGCCGCGACTCGGCCCGGGCCGCCGCGCTGTCCGCCCG
CGCGTCCCTGGCCGCCGACGGGATCTCCCGCGCCGACCTGAGGCCTGCCACGCCACGCCG
GTCTT

Homology of Contig U35_7804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None