barSeed - Barley Seed Development Database

Probe CUST_679_PI390587928

Source Contig U35_33767

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_679_PI390587928	Hv_44K_v2	ATGTTCCTAATGGACTCACTTGTCATTACAACACTATTTCCGCGCTCACGAGCAGGTTCT	232	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365240	2538	2e-24	2431 - 2490	100	60 / 60	plus	ABC13144
Harvest35	U35_33767	304	3e-25	233 - 292	100	60 / 60	plus

Contig Sequence (304 bp)

>U35_33767 304 Hv_44K_v2
TCCAAATTGCAGCCCATTCGGGAAAGAAGTGATGATGCCAACTAAAAATAATCGACAAAA
GGAGTCTCCACAAAAGGGAAAGTTTGGTCAAGTGCTGAGGACATGGTGTTGATCCAAGCA
TGGGCAAATACTAGTTTGGATGTGGTGACTGGGGCGGATCAGAATTGAAGTAGATATTGG
GATCGGATTTCAGATTACTATAATAGCCACAAAAAACCGTCATGGACGGAGCATGTTCCT
AATGGACTCACTTGTCATTACAACACTATTTCCGCGCTCACGAGCAGGTTCTGTGCATGC
GTTC

Homology of Contig U35_33767 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None