barSeed - Barley Seed Development Database

Probe CUST_6793_PI390587928

Source Contig U35_46165

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6793_PI390587928	Hv_44K_v2	GCACTATAGAGTTTTGCTGAGAAGGCAACTAATTGCGCATTATAAAATTTTAGGTGTTGC	311	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62048.2	2891	2e-24	1879 - 1938	100	60 / 60	plus	ABC06726 ABC45841
Harvest21	ABC45841	668	3e-25	312 - 371	100	60 / 60	minus	ABC45841
Harvest35	U35_46165	668	3e-25	312 - 371	100	60 / 60	minus

Contig Sequence (668 bp)

>U35_46165 668 Hv_44K_v2
TTTTTTTTTTTTTTTTTACCACGGGCACACTCATCAAGCGCAAAATTGACAAATCTCACC
CACATTCCTACACTCCAAAAGATACAAACTGCAGCAACAAAGCCACTAGTTCTTACCAAT
ACCACTTTTGTGGGATAGACAGGTACATCAGACTCAGACCGACATAAACTTGAGTCACTA
ACAAAATCTACTAAAAGCCCTTCTTGCCTTTCTTTATCAATCAACACGCGTCATTAACTC
ATTATTCAAACCTCTCTTCAACAACGGCTCACATCTTCAGATGCCACCAAAGAATTAGAC
ATTTCGACCAAGCAACACCTAAAATTTTATAATGCGCAATTAGTTGCCTTCTCAGCAAAA
CTCTATAGTGCATTTCTCAAGTGCTGCTCTTGAAAAACAGGCTTACCACAACTCAAGCAA
CAAATGCAACCCCTGCTCTGCTGCGAAGCGACCCCCATCAGATAACTACAGCACGAGCAG
AGGCATCTATAAGACCTAATATAATTTAGGACAGCAAGCCACCCAAAGTGCTCAGATCAT
AACCAGAGATCACAGAGGGCCTAAAACAGGGCCGTAAGCAGCTTATTCAGATGGAATTCA
CCTCAGGTGCTTCACTGACTGAAGTTCATCTCTGAGTATCTCCTATGCTTGTTCTGGCGC
TGATCATG

Homology of Contig U35_46165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None