barSeed - Barley Seed Development Database

Probe CUST_678_PI390587928

Source Contig U35_19474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_678_PI390587928	Hv_44K_v2	TAACTATCTGGTATCGTGCACCTGAGCTGTTACTTGGAGCTAAACACTACACAAGTGCTG	782	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.634	0.561	1.552	2.089	1.018	0.990
Raw	24.015	31.078	79.433	169.149	28.947	30.806

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250132.1	3524	2e-24	751 - 810	100	60 / 60	plus	ABC12828
MLOC	AK368833	1790	2e-24	657 - 716	100	60 / 60	plus	ABC12828
MLOC	MLOC_70995.3	1289	2e-24	933 - 992	100	60 / 60	plus	ABC12828
MLOC	MLOC_70995.2	1357	2e-24	842 - 901	100	60 / 60	plus	ABC12828
MLOC	MLOC_70995.1	1298	2e-24	864 - 923	100	60 / 60	plus	ABC12828
JLOC1	JLOC1_47145.1	1276	8e-25	833 - 892	100	60 / 60	plus
Harvest21	ABC11132	901	3e-25	783 - 842	100	60 / 60	plus
Harvest35	U35_19474	901	3e-25	783 - 842	100	60 / 60	plus

Contig Sequence (901 bp)

>U35_19474 901 Hv_44K_v2
GCCCATCCGATCCCCCAATCCCTCTCTCACTCCGATTCGGGGGGGGCCCAAACCCTAGGT
CGCCGGCTCCTCCCGAGGCGAGCCTAGCTGATCCGTTTGTTCTGCGCAAGCTCTGCCGTG
TTTCTCTGCTGTTTCCTCTCTAAAGGAAGAAGAGGAAGAACGAGAGGGATTTGGTCGGCT
GCCGTCGGCGGCGATGGGCGACGGCCGCGGCGGAGGGTCAAACCGCCCCGCGTGGCTGCA
GCAGTACGAGCTGGTGGGGAAGATCGGCGAGGGCACCTACGGCCTCGTCTTCCTCGCGCG
CCTAAAGCCAACGCATCCCCAGGCCGCTGGCCGCCGCGGCTCCCCCATCGCCATAAAGAA
GTTCAAGCAGTCCAAGGAGGGCGATGGCGTCTCGCCTACCGCCATCAGAGAGATCATGCT
CCTGCGCGAGATCAACCACGAAAATGTCGTCAAGCTCGTCAACGTCCACATCAACCACGC
AGACATGTCCCTCTATCTCGCCTTTGATTACGCCGAGCATGACCTCTATGAGGTTATCCG
GCATCACAGAGAGAAGCTTAACCTCTCCATTAACCAATACACAGTCAAATCCTTGCTCTG
GCAACTGCTCAATGGCCTCAACTATCTCCATAGTAACTGGATTATCCATCGAGACCTCAA
GCCTTCTAATATACTGGTCATGGGAGAGGGAGAAGAACATGGAATTATAAAGATTGCTGA
TTTTGGCCTGGCTAGGATATATCAAGCTCCACTGAAACCACTAAGTGACAATGGGGTTGT
TGTAACTATCTGGTATCGTGCACCTGAGCTGTTACTTGGAGCTAAACACTACACAAGTGC
TGNTGACATGTGGGCAGTTGGNTGCATTTTTGCCGAATTGCTTACATTGAAACCACTGTT
C

Homology of Contig U35_19474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42950.5	261	3e-151	protein\|cyclin-dependent kinase E-1, putative, expressed
Brachypodium v1_2	Bradi3g21650.1	471	1e-153
Arabidopsis v10	AT5G63610.1	470	2e-125	\| Symbols: HEN3, CDKE;1, ATCDK8 \| cyclin-dependent kinase E;1 \| chr5:25463645-25465057 REVERSE LENGTH=470