barSeed - Barley Seed Development Database

Probe CUST_677_PI390587928

Source Contig U35_19475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_677_PI390587928	Hv_44K_v2	GAAATTAATGGTCATTAATTTAGTAGGTCCCCAATGGATGGAATGAAATTGACATGCAGT	456	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.600	2.491	1.428	0.580	0.152	0.051
Raw	522.661	844.928	401.569	266.787	24.187	8.621

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_15444.1	596	8e-25	446 - 505	100	60 / 60	plus
Harvest21	ABC11431	580	3e-25	457 - 516	100	60 / 60	plus	ABC11431
Harvest35	U35_19475	580	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_19475 580 Hv_44K_v2
GAACACAAGAGTCTAAAAGGAAGAAAAAGGCTTGCTAACCGGCCATGGAAATCTTCAAGA
GGAACACGAGGGCTGCATCGTTGGCGGTTCTGGTGGTCATGGCCGCAACCTTATTATTGT
CCTCTTCAACTGCACATGCAGATGAGTGCATGGTGGCGCCGGAATGCTCGGGTCCCTACC
CGGAGGTGATATGCCCTGAGCTATGCGCTCGTTATGGTTACAACAAAGATGGATACTGCA
AGGAATCACGCTACTGCTGTTGTCGCGGTGCCAAATTAGCCGACCCGGCGGTCCTCGTGA
ATCCTAGTGTCCTAAATCCATAGGATAGTAGGGAAACCCTAGATGCTGCTGCATGCGCCA
CAATATGTACCTTTCTGGCTGGAAGATGAAATTTGATATGAAATAAGTTTTTTATCGGTT
AAAAAAAAAAAAAATTTCATCTAGATTGATATGGTCGAAATTAATGGTCATTAATTTAGT
AGGTCCCCAATGGATGGAATGAAATTGACATGCAGTAAAAAAAAAAAGGAAAGCATAATT
TTATTCGACCAAACTAAATTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None