barSeed - Barley Seed Development Database

Probe CUST_6758_PI390587928

Source Contig U35_40811

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6758_PI390587928	Hv_44K_v2	CAAGGTTATATTGTTCCAGTTTGCTTTGTTTGCACATATGGAGACCCCACCCACCAGGAA	362	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24585.2	819	2e-24	277 - 336	100	60 / 60	minus	ABC21168
JLOC1	JLOC1_16892.1	849	8e-25	484 - 543	100	60 / 60	plus
Harvest35	U35_40811	731	3e-25	363 - 422	100	60 / 60	minus

Contig Sequence (731 bp)

>U35_40811 731 Hv_44K_v2
TTTTTTTTTTTTTTTTTATTTTAGTGCTGACATAGTGTTATAAGAGAACTCAGTGTTGAT
ACACAGCGTTCTAAGAAGTTTACAATGAGCATAAGTAGAAATACAGTGTTGCTATATACT
GTTGTAAATTGATAATAGATTATTTACAATGAGCATAGTATATAGCCGGTAGGTATCATG
TAGATGGTTGTGGTTATGAGGTGATGGTCATCAAGGAGAGCCATAAGCCATAAGTTTCCT
ACGCACTCAATTCTAGTTGCTGGAGGTGCGCACCCATGCTTGCCAGATTCGTCGCCGGGC
ATGTGGTCTTCGGGGGAAAGTGGTGCCCATGATGCCGGAGTAGCCGAGCCGCTTGTGGTT
GCTTCCTGGTGGGTGGGGTCTCCATATGTGCAAACAAAGCAAACTGGAACAATATAACCT
TGACAAACATGATACATGATGCGGGGAGAAGTGTGTATCCTTTCCACAAGAACAATGGAG
CTTAAAAATGAGATGGAAATGCTGATAAGTTGACACTTAACAGAATCATGGAATTTGCTT
TCCAATTTATATCATTGTAAATGCTACATTCCTCAATGGAGTATGCACTTCCAAAAATGA
AGTTGACAATTAAAGCACGCATCAATGGCTTAACACTGCTGCAAAAATGGGTCAGACATG
CTGCAAATTCCTGCACAAAAGGCGACCCTCTACTCAGTTTTTATATATTCAGGTTCTGAA
CAAAGTTAATA

Homology of Contig U35_40811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None