barSeed - Barley Seed Development Database

Probe CUST_6744_PI390587928

Source Contig U35_26527

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6744_PI390587928	Hv_44K_v2	TTTGAGAGAGTTCCGTCACCTAATGTCGTTTCTTGGGTCACCTTGCTCAATGGTTATTGC	715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52525.1	2698	2e-24	687 - 746	100	60 / 60	plus	ABC24943
JLOC1	JLOC1_33667.1	2372	8e-25	647 - 706	100	60 / 60	plus
Harvest21	ABC23844	824	3e-25	716 - 775	100	60 / 60	plus
Harvest35	U35_26527	824	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_26527 824 Hv_44K_v2
CGCACACCTTCGCCCGCCACCGCTGGCTAGCCACCTCATGGCCGCGGCGAAGGCCACCGG
CTTCGCCGCGGCGGCGACCTCCGCAGTGTTCCGTAGCAACCAGGAGCTCACACGACTGGC
GCGTTCGGGACAGCTGGCCGAGGCACGCCGCTTGTTCGATGAGATGCCCCACCGCAACAC
CGTCTCCTACAACGCCATGCTCTCCGCGCTCGCGCGCCACGGCCACCTCGCCGACGCGCG
GTGCCTGTTCAACGAGATGCCCCGCCGCAATCTCGTCTCCTGGAACGCTATGATCGCGGC
CTGCTCTGACCACGGCCGTGTCGCGGACGCCCGGGAGCTGTTTGACGCAATGCCCGTCCG
GGACGACTTCTCCTGGACGCTCATGGTCTCCTGTTATGCACGCGCAGGGGAGCTCAAGCT
TGCTAGGGAGACGATCGATCGAATACCTGGGAAGAAGTGCACGGCGTGCTACAATGCCAT
GATCTCTGGATACGCGAAGAATGGCAGGTTTGATGACGCGGTGACGTTGCTGCGGGAAAT
GCCATCCCCTGACATAGTTTCTTGGAACTCGGTGCTGGTCGGGTTCACCCGCAATGAGAA
AATAGTTCGGGCGGTCCAGTTCTTTGACGAGATGCCGCAAAGGGACATGGTGTCCTGGAA
CTTGATGCTGGAGGGTTATGTGCGCGCTGGAGATCTCAATGCGGCTGCTGTCTTCTTTGA
GAGAGTTCCGTCACCTAATGTCGTTTCTTGGGTCACCTTGCTCAATGGTTATTGCCGGGC
AGGGAGGATAGGTGAGGCGAGAGAATTGTTCGACGGAATGCCTG

Homology of Contig U35_26527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19260.1	757	3e-134	protein\|tetratricopeptide-like helical, putative, expressed
Brachypodium v1_2	Bradi4g02117.1	695	2e-145
Arabidopsis v10	AT4G02750.1	781	1e-57	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:1221116-1223461 REVERSE LENGTH=781