barSeed - Barley Seed Development Database

Probe CUST_6742_PI390587928

Source Contig U35_26529

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6742_PI390587928	Hv_44K_v2	AAAGGACACCAAATTATACGAGCATCTCTCCTCTCGTCGCGCAAAGCGAGGGAGAGGCCG	137	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75554.2	845	2e-24	12 - 71	100	60 / 60	plus	ABC12784 ABC22800
MLOC	MLOC_75554.1	2282	2e-24	358 - 417	100	60 / 60	plus	ABC12784 ABC22800
JLOC1	JLOC1_50407.1	2209	8e-25	80 - 139	100	60 / 60	plus
Harvest21	ABC22800	551	3e-25	138 - 197	100	60 / 60	plus	ABC22800
Harvest35	U35_26529	551	3e-25	138 - 197	100	60 / 60	plus

Contig Sequence (551 bp)

>U35_26529 551 Hv_44K_v2
TTCCTGCCTATCTACTCCGTCCGGCGGGCCCATCCCCCGCCTCCCTTTTGCCGCGGCCGT
CGCTTTTCAGCGAGCCGACCCAGCAAAGTGGCAGCCATACCGAGCGAGCGAGCGAGCGAG
AGAGAGAGAGAGAAAGAAAAGGACACCAAATTATACGAGCATCTCTCCTCTCGTCGCGCA
AAGCGAGGGAGAGGCCGCCGCACGGCTCGGCCCCCATCCACTCCCTCCCTCCCTCCCTCC
GCCGCGCCGACCGACCGGTCGGGGACGGCGCGCGCGTCGGCGATGCGGAAGGGCTCGTCG
CGGTCGGGGTCGGCGCGGCACCAGCAGTTCCGCGCCCGCGCCAAGACCCGCGTCGACGAC
CTCCAGGACATGTTCTCCGGCCTCCAGTACGCCCGCAAGGAGGCCCGCTCCACCGACGCC
GTCCTCCTCGAGGCGCAGCTCCACCAGATGCTCCGCGAGTGGCGCGCCGAGCTCAGCGTC
CCGTCCACCGCCTCCTCCCTCCAGGCGGGGAACGACAACCGGGACCAGTCGGATCCGCCG
TCCGAGACACC

Homology of Contig U35_26529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None