barSeed - Barley Seed Development Database

Probe CUST_673_PI390587928

Source Contig U35_14060

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_673_PI390587928	Hv_44K_v2	CCATCTTGTTGTCATCAGCAATGGAAATGAAAATGTCGGCTTCCTCTTCTCATCAAAAAA	601	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.408	1.603	1.161	0.949	0.557	0.484
Raw	8154.017	14929.210	9185.683	11728.923	2405.910	2319.610

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2696.1	366	3e-21	141 - 194	100	54 / 54	minus	ABC00669 ABC00672
JLOC1	JLOC1_1615.1	294	2e-21	67 - 120	100	54 / 54	minus
Harvest21	ABC00672	671	3e-25	601 - 660	100	60 / 60	plus	ABC00672
Harvest35	U35_14060	672	3e-25	602 - 661	100	60 / 60	plus
Harvest35	U35_47217	611	6e-22	108 - 161	100	54 / 54	minus

Contig Sequence (672 bp)

>U35_14060 672 Hv_44K_v2
CTGCCCTAACCTCCGACCTTCTCCTCCTCCCGGCGCACCGACGACATGGCCCGCACGAAG
CAGACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCCACCAAGGCC
GCCCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCGCTTCCGCCCCGGC
ACCGTCGCGCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAG
CTCCCCTTCCAGCGCCTCGTCCGGGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTC
CAGTCCTCCGCCGTTTCCGCCCTGCAGGAGGCCGCCGAGGCCTACCTCGTCGGGCTGTTC
GAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCAAAGGACATT
CAGCTCGCCCGCCGCATCCGTGGCGAGAGGTCCTAACCTCTGTTCGTCGTCGTCGTGTGT
TAATTACATCCTTATTAGGCTGCGTTCGTTCGTGGGAAATGTGCGTGCTATTAGTGTTTC
AGAACTGAACCTTAGTTGTTCTTCTCATGGTGGATGTGCTCTGCCCCCCAATCTGATGGT
ACCATCTTGTTGTCATCAGCAATGGAAATGAAAATGTCGGCTTCCTCTTCTCATCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_14060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	2e-88	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	4e-89
Arabidopsis v10	AT5G65360.1	136	1e-88	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136