barSeed - Barley Seed Development Database

Probe CUST_6731_PI390587928

Source Contig U35_14550

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6731_PI390587928	Hv_44K_v2	GTCGGCAATTTTGCAAAGTATGTTTGTGGTTTTTAAACATAAACAGGTGTTCTGGCTGTC	1675	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.580	1.680	1.327	0.879	0.354	0.330
Raw	2971.397	4956.783	3398.587	3531.733	500.078	510.003

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_24253.1	1546	4e-23	1395 - 1454	98	59 / 60	plus
Harvest21	ABC00892	1744	3e-25	1662 - 1721	100	60 / 60	plus
Harvest35	U35_14550	1752	3e-25	1676 - 1735	100	60 / 60	plus

Contig Sequence (1752 bp)

>U35_14550 1752 Hv_44K_v2
CACTCGCTACGCCCGACTTTGACCGCCTCCTCGTCTCCGCTCCGCTCCCACGCCCGCCCC
GCGGGAGAGAGGCGACCGGCGGCGCGCGAGGAGGGGCCTACCCCACCGTCTCACCACCCC
GCCGGCGAAGATGTTCGGCCGCGCCCCCAAGAAGAGCGACAACACCAAGTACTACGAGGT
CCTCGGGGTGCCCAAGGACGCCGCCCAGGACGACCTCAAGAAGGCCTACCGCAAGGCTGC
CATCAAGAACCACCCCGACAAGGGCGGTGACCCCGAGAAGTTCAAGGAGCTGGCACAAGC
CTATGAGGTTTTGAGTGACCCTGAGAAGCGTGAGATCTATGATAAGTATGGCGAAGATGC
TCTCAAGGAAGGAATGGGTGGAGGAGGAGGTGGTGGAGTTGATCCATTTGACATATTCTC
ATCATTTTTCGGGCCCTCTTTTGGAGGTGGTGGTGGTGGCAGCAGCAGGGGCAGAAGGCA
AAGGAGGGGAGAGGATGTTGTCCATCCACTTAAAGCTTCTCTAGAAGATCTTTACAATGG
TACCTCAAAGAAGCTCTCTCTTTCCCGTAGTGTCCTCTGCTCCAAGTGCAAGGGCAAGGG
CTCCAAGTCTGGTGCTTCCATGAGGTGCCCAGGTTGCCAGGGTTCAGGCATGAAGGTGAC
TATTCGTCAGCTGGGGCCTTCCATGATACAGCAGGTGCAGCATGCCTGCAATGATTGCAA
GGGCACTGGGGAGAGTATTAACGACAAAGATCGCTGCCCAGGCTGCAAGGGTGAGAAGGT
TCTTCAGGAGAAGAAAGTTTTGGAGGTTCATGTTGAGAAGGGGATGCAACACAACCAGAA
GATCACCTTCCCTGGGGAAGCTGATGAGGCGCCTGACACTGTTACTGGAGACATTGTATT
TGTCGTCCAGCAGAAGGAACACCCGAAGTTCAAGCGGAAGGGTGATGATCTCTTCTATGA
GCACACCATATCTCTCACTGAAGCTCTTTGTGGGTTCCAACTCGTTTTGACCCATCTGGA
CAACAGGCAGCTGCTCATTAAATCAAACCCTGGTGAAGTTGTCAAGCCTGATTCATTCAA
GGCAATCAGCGACGAGGGAATGCCGATGTACCAGAGGCCTTTCATGAAGGGCAAGCTCTA
CATCCATTTCACAGTGGAGTTCCCCGACTCTCTGGCACCGGATCAGTGCAAGGCTCTCGA
GGCCGTTCTTCCACCAAAGCCTGCATCCAAGCTGACTGACATGGAGCTTGACGAATGCGA
GGAGACGACGATGCATGATGTCAACATGGAGGAGGAGATGCGTCGGAAAGCCCATGCTGC
TGCTCAGGAGGCGTACGACGAGGACGACGACGAGATGCCGGGAGGCGGTGCCCAGAGAGT
GCAGTGCGCGCAACAGTAAGCCAAGGGCATGATTGCTAGGTTTGGGAGGCAAGCTTTTTT
GGGATCCAAGATGAAGATGCCTGCCCGCTTCTGGGGTTTTGTTGGTGGTGTTATCGATGA
AGGTGATTTTTGCCCCTATGGCGCCGGGACTGTATCCAACCATGTGTTTTCGAAAAATGC
TATCTGGCTACTTCTGATGTAGTGTGATACTCAGTATAAAAGCAATCTGTTCGTGAGAAC
AAAAAAAAAAAAAAAAAGCTGTCTGTCTGAATACGTTTGTCTACTTATTAGAACCGTCGG
CAATTTTGCAAAGTATGTTTGTGGTTTTTAAACATAAACAGGTGTTCTGGCTGTCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_14550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g44620.2	418	protein\|chaperone protein dnaJ, putative, expressed
Brachypodium v1_2	Bradi1g13640.1	421
Arabidopsis v10	AT3G44110.1	420	\| Symbols: ATJ3, ATJ \| DNAJ homologue 3 \| chr3:15869115-15871059 REVERSE LENGTH=420